RNA id: TU190760


Basic Information

Item Value
RNA id TU190760
length 2753
RNA type TUCP
GC content 0.42
exon number 3
gene id G141439
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5743559 ~ 5843146 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaagtagtgaacttgatcatttattttacgtTGTATTGAACTATGCACGTTACTTCTTTTTGACAagattggttgaaagaaacccatatttctgatataggaactgaaaatgtcTACTGATGatgtaaaaacatttacaaGTCAAAATGTGATACAATCTCACTGCAAATGCATCtcctcaaataaataaatatgcccaTTATAATGTCAAAAGATCCACCTGTGATGCTATTTCCTTTGTAACGTGACCAGTAAGTTAAATATTCCAGATTTAGTGTATATTTGTACTACGTTTTGACAAAGTTTTCCATCACAGTGAGAGTGAATCAGTTCGTAGAGGTCGGGACGAGGGATAAAGCAACCTTCTCTCTAGACTTATTATTCGTCCTTCGAAAAGCCTAAAGTTAACCCTTTAACTATACAGCGTAAcgtgtatgtgtacatgtttgtgtgtgcgtctttTCAATCCAAACCTTTTTGGTTAGATGTAAGAAGTGGGAGCAGAGCCGTAGCTGTGAGGTCACTAGGGCTGGGTCTCGCCACTGAGCCGCTGAATCGATtccgattcacaaggtcccccgattcgattcaatatcgTTTCCATAGGGGATATTTCAGTTACTATAACCAATTTTGCTCGGATATGATAGAGATTCACAGAAACTTAGGCTGTAAATTGAACACGGAACCCTGGTGCATTACTACAAATATTAATGTTGTCGTTAAGAATTGACCCCAAAGCAGTTACATCATTTAGAGACCGAAGAAAGTGCTTTCTTTAGTGCAGAGGGTGTGATGCTGAGATGGAGACCTGAAGCCAGACATCTGTGAAAATGGCCATGGCAGTTTTTCCCTCGCCAACATGTCGCCTAACTTTGGAGCGTTGTTTAGCATGACGAGGGTTCCTTAGATCGTCTAGTTTCATATGACCCCAGTATCCTCACTCTAGCTTTAAGAACTGAGCCTCTAAAAAAAACGATCTCGGGATTTTATGAATCGATATCGGATCACTCAAATGAAGACCGATTTGAGTTGGAAAATCAATTTTGGACTCTGTCCTTCTAAAATCTCGGCTACAGCCATGTTTAGGAACCATTACTATACTGAACAACTGCACTgagttctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccatccACTCAGTGTCGTGTACAGCTGTGGTGTATCTCATTAACATTTCTCGCCTCTCTGTTCATTTCAGTCCTCGCTGCTTTAGCTCTCTGTCCCGTTCGTTTCCTCTCACTCCCTTTTTTATTCCTCCTCGCATCTCCCCTCTCCCTGTTTCTTTCCCTTcatgggagtttttttttttccgcaaCAACtgctaggggtgggaatcaccagaggccccacgatacgacattatcacgatacttatgtcactgCACGATGTTATCGTTTATGCTATACAGTTTTATCGTCTATGTCCCGATACAATATTGTTTATGTCACGATGCGATATTATCGTGTATGTCACGATACAGTAGTATTGtgtatgtcacgatacaatattatcacAATACTTGTGTGACGATACAGTGTTATTGTTTaagtcacgatacgatattattgttTATGTCACGGTACGATATTATTGTTTAAGTCAAGATACGATATTGTTTaagtcacgatacgatattattgttTATGCCACAATATGATATTATGATGTATGCCACGATAGGATATTATCACAATACTTCTGTGACGGTACAGTATTATCGTTTAAGTCACGATACTaatgtcacaatacgatattgtttaagtcacaatacgatattgtTTGTCACGATACATTGTTATTGtttgtcacgatacgatattattgtttgtcacaatacgatattattgtttaagtcacgatacaatattattgtttgtcacgatacgatattattgcgattttaaactctttctgcgatatattgcaatttattaccttttttgccaacttcaaatgatgtccccgaAGGAAAACTTTGTGTCTTTCTTGCTCACGGTCACCCCTGCTAACCTCACCAGAAGAAAACCAACTCAACTgcaccatctagtggactgaacaagacatttattTGATTATTCTAGTAGCAAAAAGTTAAATTCCCATGTGCAATTTAtctaataaaagatcgatactcgACGtccgtgtatcgatacagtattgccacaggaAATATCGCGATAAAGTGCTGTGTCTATTTTCCCCCCACCAACTGCCCAACACTTTCCTCTCCTTCCccttcctccatccctcctctgtcctcccgcatctgttcctcttcctccatcacCGCCCTGTTGCCCTGCTTTCCGCCTCTCACTCTTCCTCCTGTTTCATCTACATCTCGAATCAACCTCCATCCCCCCTCCTGTCTTTCCTGCTCTCTTCCTTTCATCCTTCACTTCCTCCTCTCACTCTTGTGTCAGACCTCCGCTCCCCTATCTTCTCTTCATACCCCCTGTCGTATCTTTCTCCTTCCACATCATCTACCTTTTCCATTCTTCATCATCTCCCTTTGTTTCCCCACCCATCTCTCGGTCACGTCGCTCTTCCCCTGCCTCACCACTCGGGCCTCGTGCTCGCTCTCCGTCCCTtcccccatctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190724 lncRNA downstream 31843 5711434 ~ 5711716 (-) True G141416
TU190699 lncRNA downstream 159033 5584162 ~ 5584526 (-) True G141394
TU190676 lncRNA downstream 179175 5560031 ~ 5564384 (-) False cd99l2
TU190665 lncRNA downstream 268421 5452292 ~ 5475138 (-) False nat16
TU190523 lncRNA downstream 535099 5208237 ~ 5208460 (-) True G141259
TU190833 lncRNA upstream 126805 5969951 ~ 5970613 (-) True G141467
TU190834 lncRNA upstream 127789 5970935 ~ 5971387 (-) True G141468
TU190837 lncRNA upstream 146749 5989895 ~ 5992227 (-) True G141470
TU190999 lncRNA upstream 312906 6156052 ~ 6157413 (-) True G141601
TU191007 lncRNA upstream 356162 6199308 ~ 6205730 (-) False gal3st4
XM_039823385.1 mRNA downstream 8377 5727636 ~ 5735182 (-) True si:dkey-6n21.13
XM_039823382.1 mRNA downstream 58898 5679826 ~ 5684661 (-) False rnaseka
XM_039823383.1 mRNA downstream 58914 5678216 ~ 5684645 (-) True rnaseka
XM_039823379.1 mRNA downstream 123294 5616677 ~ 5620265 (-) True med11
XM_039823376.1 mRNA downstream 160564 5560026 ~ 5582995 (-) True cd99l2
XM_039823451.1 mRNA upstream 58778 5901924 ~ 5921871 (-) False LOC120573619
XM_039823450.1 mRNA upstream 58778 5901924 ~ 5921871 (-) False LOC120573619
XM_039823452.1 mRNA upstream 58778 5901924 ~ 5921871 (-) False LOC120573619
XM_039823449.1 mRNA upstream 58778 5901924 ~ 5921871 (-) True LOC120573619
XM_039823468.1 mRNA upstream 102886 5946032 ~ 5955060 (-) True snapc2
TU190708 other downstream 143097 5596958 ~ 5600462 (-) True G141400
TU190492 other downstream 643477 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 783554 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 1079361 4641495 ~ 4664198 (-) True G141145
unassigned_transcript_681 other upstream 113905 5957051 ~ 5957132 (-) True trnal-aag_6
unassigned_transcript_683 other upstream 185695 6028841 ~ 6028922 (-) True trnas-uga_22
XR_005641400.1 other upstream 378825 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other upstream 378825 6221971 ~ 6226806 (-) False LOC120572220
XR_005641774.1 other upstream 492348 6335494 ~ 6335632 (-) True LOC120573734

Expression Profile