RNA id: XM_039823013.1


Basic Information

Item Value
RNA id XM_039823013.1
length 1922
RNA type mRNA
GC content 0.59
exon number 5
gene id gal3st4
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6177921 ~ 6220260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacagactcCCTTTCTGCGTTCtgtcccagtgtgtgtgtgtatcggcAGTCGGGAGAATAACGTTAGAGCGGTCTGTGCCCAGACAGAGGGAATTCGGTTAGAGCCTCGGTGAGGGCTAAAAGCAGCGTTCAGCATCCTACAGACCGACCCGGGCTCCGTGTGGGGCCGCTGCGGCTCCGGCTCCATGGCCTGATCTGTACCGGCGGCGGACGGACCGGCTGCAGCTGAAGCCTTCGAGATGCCCCGAGCGCTCTGCAGCTGCACAATAACACCGTCACCGATACCGGCCCGGGGACTCAGCTATGCTTTTCAGACGGAGAgccagGATGTTGCGGTTGCTGGTTTGTGGTCGGTTGGGTCCAGTGTGGATGTGGAAGGCGCTGCTGCTCTTCGTTGCCATTGGGTTTGCTGGCCAGCTGTTGGGGGTCATCTTCAACAAGAGCAGTGTGCAGTCAGCCGGTCGCTCCATCTTTTCCTCCCCCGATGCCCAGGGGCCCTCTCTGGGCTCCTGTCAGCCCCACACCCATATCATGTTCCTCAAGACCCATAAGACGGCCAGCAGCACCGTGCTCAACATGCTGTACCGCTTCGGGGATGAGCGTGACCTGCGCTTCGCCCTGCCACTGGGCTACCAGCTGGGCTACCCACTACCATTCAACGCTCACAGGGTCAAAGGTTACAGAGGTCCCAGAGCCGTGGAGTTCCACATCATGGGCAATCACATGAGATTTAATAAGGCTGAGACGGAGAAGGTGATGCCTGCAGACACGTTCTATTTCTCCATCATCAGAGACCCAGTCGCTCTGGCTGAGTCCTCCTTTGCCTATTATAAAGAGGTCGCGCCTGCCTTTCGGAAAGCCAAAAGCTTGGGCGACTTTGCTGACGACCCTAAGAAATACTACGACCCCCGCCTCCGCAACAACCACTACGCCCGGAACCTGTTGTGGTTTGACTTCGGCATGGACCACAATGCTAATTTCTCGGAGGCACTGGCTCAGCGCGCTGAAGCCATGATCCGCCGCACCTTCAAGCTGATTCTGGTGTCTGAGTACTTTGACCAGTCCATGATCCTGCTGAGACACGCCCTCTGCTGGCCGCTGGACGCTGTCGTCTCATTCAGCCTCAACGCTCGGCAGCAGAAGCCCAGTGTCATCGGGGGGATGGGCGGGAGCTGGGTTGGCAAAGCGGTGGCGGCGGCCGGCGTCGGCGGCAGAGTGGTACGTTCCCAAGCCAAGACGCTGACCAATGTTACGGAGGAACAGCGGGAGAAGCTGCGGCAATGGAACGCCCTGGACTGGCACTTATATAAGTCCTTCAACCGGACCTTCTGGGGGGAAATCAATAGGTTCGGTCACGCCCAGATGGAGCAGGAAGTAGCTCTTCTCAGGACGCGGCGGGAAGATCTGGCTCGGGTTTGTCTCAGGGATGGCGGAAAGCCTGTAGAGTCGCACCGGATCCGAGACAAAAACATCCGCCCGTACCAGAGCGGATTGGTGAAAATTCTCGGTTACGAGCTCCAGCTGGGGCTGGACAACGCCACCAGGATGGCCTGTCTGAGCATGATCAGGCCTGAGATCCAGTACAAAGACGTGCTGGATGCTAAACAGTTCCCACGGGCTCCGGCGGCCCAGCCAGGCCAACCGAACCAGGGCCCGATGGTAGCGGCAGGTGGATCTCTTTCAAGACAAGACTCGTCCAGGACAGGAGAGAGGCCGGTAGGGGGAGAGGCTGGGGGGAGGACggtggaggagggggagagggactGGGATGGGAGCCGCTTAATGAGGAGGAACCTGACTTTAATACGAGGGCAAGAAAAAGGAAGATGAGGTTTGAGGCTGCTCTGGTGTTGGACGACCAGGTTGTCTTCTGTCTCACCGTCTCGTTGGACAAGCTGCCAGTCAACACGCTTACAGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190999 lncRNA downstream 20508 6156052 ~ 6157413 (-) True G141601
TU190837 lncRNA downstream 185694 5989895 ~ 5992227 (-) True G141470
TU190834 lncRNA downstream 206534 5970935 ~ 5971387 (-) True G141468
TU190833 lncRNA downstream 207308 5969951 ~ 5970613 (-) True G141467
TU190758 lncRNA downstream 348453 5777783 ~ 5829468 (-) False G141439
TU191019 lncRNA upstream 59657 6265440 ~ 6266025 (-) True G141612
TU191020 lncRNA upstream 60368 6266151 ~ 6266583 (-) True G141613
TU191040 lncRNA upstream 103115 6308898 ~ 6309895 (-) False sox19b
TU191049 lncRNA upstream 170215 6375998 ~ 6378372 (-) False tbc1d14
TU191105 lncRNA upstream 250156 6455939 ~ 6511995 (-) True G141667
XM_039823454.1 mRNA downstream 172703 5998118 ~ 6005218 (-) True serpine1
XM_039823409.1 mRNA downstream 210493 5959440 ~ 5967428 (-) True vgf
XM_039823468.1 mRNA downstream 222861 5946032 ~ 5955060 (-) True snapc2
XM_039823452.1 mRNA downstream 256050 5901924 ~ 5921871 (-) False LOC120573619
XM_039821425.1 mRNA upstream 21214 6226997 ~ 6231297 (-) True LOC120572220
XM_039821509.1 mRNA upstream 31790 6237573 ~ 6243669 (-) True tm4sf21b
XM_039823555.1 mRNA upstream 103676 6309459 ~ 6315817 (-) True sox19b
XM_039822037.1 mRNA upstream 125905 6331688 ~ 6340737 (-) True eif4a1a
XM_039822036.1 mRNA upstream 137846 6343629 ~ 6361111 (-) True senp3b
unassigned_transcript_683 other downstream 148999 6028841 ~ 6028922 (-) True trnas-uga_22
unassigned_transcript_681 other downstream 220789 5957051 ~ 5957132 (-) True trnal-aag_6
TU190760 other downstream 334775 5743559 ~ 5843146 (-) False G141439
XR_005641400.1 other upstream 16188 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other upstream 16188 6221971 ~ 6226806 (-) False LOC120572220
XR_005641774.1 other upstream 129711 6335494 ~ 6335632 (-) True LOC120573734
XR_005641775.1 other upstream 130838 6336621 ~ 6336759 (-) True LOC120573735
TU191048 other upstream 147681 6353464 ~ 6371093 (-) True LOC120572256

Expression Profile