RNA id: XM_039823423.1


Basic Information

Item Value
RNA id XM_039823423.1
length 4275
RNA type mRNA
GC content 0.51
exon number 12
gene id tbc1d14
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6375972 ~ 6416457 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAGTGCAGCGATGGTGACTAATAACATACGGCGGTGCTGATTtgctgacacacacgcacagcagcagcaacagaccTGATGCAGAGCTGTACAGCGTAGCGTCActgctcagagagagagagagagagagagagcgagcgggGGAGGAAAAAAGGGGTATCATGCTGCTGCATCGTTTCCAATGCGGGGTGTGTCCCTCCGTTGGCAGCTTGACTGTCCCTCTGCCCTCCTTTTTGAtctgctcctcctccttgtCTTCTCGCTCCTGGGTGTCTTGTTGCCAGGAGTGATCCCCCCCAGGAGCGGTGATGACGCTAGGCTAAGGTTTTTGGAAACAAACCCCCACCGGAGGACTGGCCGCCTGTAAGGAACAGCAGCGTTCATGGAATATGAAACAAAGAGTGGCAGAGCTGGACCTGGCAACCCGACATCTCCCAGGCACAGTGTGAGGAAGAACCTGGACTTTGAGCCCCTCTCCACCACCGCACTTATACTGGAGGACAGGCCTGCCAATCTGCCTGCCAAGCCAGCCGAGGaggcacagaaacacagacagcagTATGAAGAGATGGTGGCCCAGGCCAAGAAGAGAGAGTTGAAGGAGGCTCAGAAGAGAAGGAAGCAGCTGGAGGATCGGTGTAAGCTTGAGGAAAGCATCGGCACAGCCGCCCAGATCTGGAACCAAGAGATCTTACCTAACTGGAGTACAACGTGTACATCTCGACGAGTGAGAGACCTCTGGTGGCAGGGCATCCCCCCCAGTGTGAGAGGCAAAGTGTGGAGCCTGGCTGTGGGCAACGAGCTTAACATCACACACGAGCTGTATAGCATCTGTCTGTCCCGGGCAAAAGAGAAGTGGAGCACCACGCCAGCACCTTCCTTAGAGACTGAAGCGGAAGATGCTGGTTCGTCAAACCGGGAGTCGAGCCTGGAGCTGATCAAGCTGGACATTTCAAGAACCTTCCCCCAACTGTGTATCTTCCAGCAGGGCGGGCCATATCATGATGTGCTGcacagcattctgggagcaTACACTTGTTACCGGCCAGACGTTGGCTACGTGCAGGGAATGTCGTTCATCGCAGCAGTGTTGATCCTGAACCTGGACACAGCTGATGCCTTCATAGCTTTCGCCAACCTGCTCAACAAGCCCTGTCAGATGGCCTTCTTCAGAGTCGACCACAGCCTtATGTTGACTTACTTTGCTGCATTTGAAGTGTTCTTTGAAGAAAACCTACCAAAGCTCTTTGCACATTTCCAGAAAAACAACTTGACCCCCGATATTTATTTGATCGACTGGATCTTCACCCTGTACAGCAAGTCTCTGCCGTTGGACCTGGCGTGCCGGGTGTGGGACGTGTTCTGCCGAGACAACGAGGAGTTCCTGTTCCGCACGGGCCTGGGCCTGCTGCGCCTCTACCAGGACGTCCTGACCACCATGGACTTCATCCACATGGCTCAGTTCCTCACGCGCCTGCCCGACCACATCCCCGCCGAGCAGCTCTTCCAGCACATCGCCGCCATCCACATGACCAGCCGCAACAGGAAGTGGGCGCAGGTCCTGCAGGCGTTACAGAAAGATCCGGAGCGAGGCAGCCCGGTGCTGAAGCGCTGAGCTGAGATCAGAGGAAAAGCATCACACATTACCAGACTCGAGCAGAccgacccccccaccccccctccaccccccaccccccctccacccccggGGACGGCCCCATGCACCTGAGAAAAGACGTTTCACTTCAACGGGGGACATATCGGGTCTTAGCCGCTGTGATAAACCTCTTCCCCAGAGCCGTGTCACCGCTTTAACCGGAACCAGCACCCTGGACAGGGGaggcggggggagggggggtggggtctGTCGGTGAGACGTGAGCGGTGTGAAAAGGAATACGAGGCCTTATTTATCTCCCACCACCTGCCCTCTGCTCAGAGGCCCAGGCCTGGACTGTGAAGTGGAGCTGGCAGAGGCTGAAGAATGTATCATACACTCCCACCCACGGACCCGCGGGACCCACACAGATACCAGTTACTGCTCGAATCCTCAACTTCGATTTGAAATTCCTCTGCTGTCAGCGCTCTTTCTAGCTACACTTCTGCTCGTCTTCTCTTTAAATGTGGCTATTTCTGCGACAAAAACCATACGTGTGAATCCCCAGTCTCGAAACGGTTTGGGTCAGGGAAAGAAATAGTCAAGTCCTTTTTTAAAAGGCATCTCCAGAGTCCGAATCTGCTGATGTgagtttttaaatatgttaggcGGAATCTCAGCTATTTGTTTCTGCACCTTCCCCCCTCAGAACTTCAGTCATTCCTTCATTGTCCTCTGCGTTTGATTCTGTCCTCAGTGTGCTTTTTCCTTGGGGTGTTTCCCAGTTTGGTACAGATCTGTCTCCTGAATCATTCCATGAAGCCAGCCCTCAGTCTCGGAACGGGCTTTTGAGTCTAGAAAACCGGAAATTCCCACAACGTTCCCGCTGAAGACTATATCGGGTGTCTCTGAGAGCGCCGCGTTGCTGCATTTGTTGTGACCCTCTGGAAAGCGGTCATCCGCCGcctgtagaaaaaaaagagttttataatatatttatgtcAATCAAACTGGAGTAAATCATGAGGTGAACTGCTGttagacacacacgcaccatACAGTGTCAGAcagggacccccccccccttgcccTGAACGTCTGAGGTACATTTCAGCTGGTTGGTGTTCCGCTTCTTGGTGCGAGTGTGGCGTctttaaaatgttgtatttatttaatatttatcaGAAGGACACAAACGGGACTTGTTCGAGTCGAATGAAGGGTCGTTGCTGAGCCTCTCCTGCCTGTTTTCTCTCGGCCTTTTTATCTCAAGCAAGAGAGACCGATTCACAGATCGACCGTGGTAGGAAAACCGATGGCacctttttagtttttcaaGTGGCGTTTGCATCGCAGAGTCTGATTTCCGCAGTCAGTGGTCACCTGGCCCTCGGCCGCAACTCACCGGTTACAGCTTTGTGGCCGCTGGTCTGCGTCAGTGACGCTTGTGTTCACGCTGTGGTTAATGTGTCACTTCATCCTGAGCAGTGGGCGGGGCCAGCATTTACAGCACATGTtggttggggttttttttttttttgcccagccAAGTTTTGATGAGTTAAGATAGGCTAGACAGTGTTAAGTTAGTAGGCTACACAGCTTTTCTTGATAATCCGATAAAAACAAGTGAAGTACCATCGTACTGTTGATCCCAACTTTTTTGTGAGTTGCACCTTTTGCACAGACTTGTTCATCAAATGAAATAAGTGCAGAAATCTCATCAGCTGTTAATGTCTGAGGAGTTATTAGATGTGTGTTGTGCTGCTGACTTTCCGTTTGTTGGACTTTACCCTGTTCTGTAACATTGGTGATGTGTATTTGCCTCTCGTTCCCACTGAAGCTAGACTAGTGTCTTTGTGTGCCTGGACCACAGCCGAAGTACAACACGTTTAAAAACAGGAAGCGCCTGTCCTCTGTAAATCATCGTCATCGTCATCTCGGCCGGTTCATGCTGCCTGCTAAAAGACGCActttctgtgtgtttcagtgtgtgtgcatcagCTCAGCACCATGCAGCGCACTTTCAGATTACTCAAtgcactcccccccccccaactcccCCAGTGTGGTGACACACCGCAGGACTCTGCAATAAAGCTTTTTGCACATGACATGTAAGCCTTTGAGTTGTGCCTCGCATCACCACTTTATGTCACCAGCCGCAGGTTTAAACAGGTTGTCTGTTTGTCatccttttgatttttttttttttttttttttggtgcttaAGTagtgttaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcatgtgtttgtgttaagtGGCATTTTCAGAATGACATCTGTTAGTTACTGGTTAGTTGTGACATTCAAGGCTGGTCCGTGTTTGAATTGGCCCTCCCAGCTCTACAAACACTACCTGCTCCCCTTcccaaaacacacacctacGTCACCGTATGATCCCACCAGAAACTAAATTCAAACTACATATGAATAAAAGCAGTGTAATATGCTAGAATTTCTtgggttttgtttctttttgcattgtcttgttgtgtttcttctttAAGAGACCTGTTGTACTGTAGAGGACTGGTGGACATACATGGAGACAGCAGAGGGTTACCATGCAACTTTGTCTCACTTGAACTGTATATAAATAAtggttttattaaaataaagagcTGTACATATTCAACCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191040 lncRNA downstream 66077 6308898 ~ 6309895 (-) False sox19b
TU191020 lncRNA downstream 109389 6266151 ~ 6266583 (-) True G141613
TU191019 lncRNA downstream 109947 6265440 ~ 6266025 (-) True G141612
TU191007 lncRNA downstream 170242 6199308 ~ 6205730 (-) False gal3st4
TU190999 lncRNA downstream 218559 6156052 ~ 6157413 (-) True G141601
TU191105 lncRNA upstream 60981 6455939 ~ 6511995 (-) True G141667
TU191122 lncRNA upstream 163340 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA upstream 182219 6577177 ~ 6578755 (-) True G141688
TU191192 lncRNA upstream 1000201 7395159 ~ 7462473 (-) True G141741
TU191226 lncRNA upstream 1123307 7518265 ~ 7518467 (-) True G141773
XM_039821491.1 mRNA downstream 4872 6369686 ~ 6371100 (-) False LOC120572256
XM_039823095.1 mRNA downstream 8196 6365971 ~ 6367776 (-) True LOC120573386
XM_039822036.1 mRNA downstream 14861 6343629 ~ 6361111 (-) True senp3b
XM_039822037.1 mRNA downstream 35235 6331688 ~ 6340737 (-) True eif4a1a
XM_039823555.1 mRNA downstream 60155 6309459 ~ 6315817 (-) True sox19b
XM_039823424.1 mRNA upstream 25575 6420533 ~ 6432598 (-) True kiaa0232
XM_039823425.1 mRNA upstream 25575 6420533 ~ 6432097 (-) False kiaa0232
XM_039823426.1 mRNA upstream 25575 6420533 ~ 6427242 (-) False kiaa0232
XM_039821466.1 mRNA upstream 56704 6451662 ~ 6452673 (-) True LOC120572244
XM_039823558.1 mRNA upstream 61049 6456007 ~ 6490226 (-) True LOC120573666
TU191048 other downstream 4879 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 4879 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 39213 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 40340 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 149166 6221971 ~ 6226806 (-) False LOC120572220
TU191399 other upstream 1386986 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 1442263 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 1587979 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 1712689 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 1712689 8107647 ~ 8111920 (-) False LOC120572400

Expression Profile