RNA id: XM_039823554.1


Basic Information

Item Value
RNA id XM_039823554.1
length 1474
RNA type mRNA
GC content 0.39
exon number 5
gene id fcer1g
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7781911 ~ 7787667 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACTTCCCCTGTTGTCAGTGAGGTATGAAACATTCAAGTGTTCACCAGTAcgcagaggaagaaaaaaaacccacccACAAGTTGTCGTGTTTGCTGTGTGCTGGCCATTTTGCGGAGCCCAGTCGTCCGTGTTGAGCCTGTTTTACCATGGCCGTGTGGGGCAGGAACCTGTTACTGATGGCCATTCTTCTGTGGATGAGTTTTGGGAGAGCTGCTGCTCTTTCAGACTCCCATATCTGTTACGTGCTGGATGGTATCCTGTTTACGTACGGCCTCATCCTGACTGCTCTCTACTGTAGACTCAAGATCCTCAATGCTCGGGAATATGCAGCTGAGAACGCAAAGGGCAAGAAGAATGTTGAAGAAGGCATCTATTCGGGTTTGACTCCTCACGCCGCGGACACTTATGAAACTATTGGCATGAAGAAGTGAATCCAAGACAGACCTTTtcctttaaccctctgaggtctaagggtaTTTTCACACATCTTCTTACATTCCCCCTTTTAAGGGGATTTgctgatccccatgtgtttcatatcaaaaatgttcagaacgaactcagctttctgtatagtGATGTCCAAATATTTTcccagagcaatgtgtaaagagataatttgacgctaaagctgaaacattgctgttggctttttgaaattcctcaaatctcttttgaaaacaaaccttaacttaTGATGTATTGTACGAATTGTTTCGGTGCTTGAAATGGGTTCACCAAAGTCTTTAGGTTATATATGACTAAAGTAGTAAATACATGTCTGAAATGAACttttgtaatatcgctttttgagtaggagttttGTCAAACATTGTTTGGACTCAACGGTGCATCtttcgtcctcagagggttaaatacctctttttattttatttatatattgcaTATCTAACCTCGCTTATTAGACTTTGAGAGAATGTAAGATTGCGTGCACCAGTTTTCATTTCCCTTTTGCTTTTAAGGGAAGTTAAGAAGGACGACACACAAATAAAGAAGTTGTGCCCAAGATGGGCAATCTCACAAATGCTTACCCTTGTTgctgtaagttttttttttaaatttttaattttatttgttaCTGTTCTGTTGCATATATTTAATTTTCAcgcaaacacattttaaactgtaatgcttcagacacacttttttattgtaatgcttataaaacaaaaaatgaagtgggttttttaaactgtttaacTTCCTCTTTGAGGCAATTTGAAAGATGTCTAGTTAGATGTTTAGTGCAAGATGGTAGATACTATAGTAAAAATAGCTGCGTTCCAAACCTCAGAAATACTGAGTAGTGTTTCCTGCACACCACCGGATGGCAGTGATGGTGTCTTTGGTGTTCCATACCCCACAGAGAAAAGTGTGTGAAAATGCCTGTATGATGCATAAAGCTCTTATACATACACAGCACCTATTAAATGTTCAACTTGCTTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191261 lncRNA downstream 126403 7648972 ~ 7655508 (-) False LOC120572295
TU191234 lncRNA downstream 222737 7558812 ~ 7559174 (-) True G141781
TU191231 lncRNA downstream 260118 7521213 ~ 7521793 (-) True G141778
TU191227 lncRNA downstream 263154 7518509 ~ 7518757 (-) True G141774
TU191226 lncRNA downstream 263444 7518265 ~ 7518467 (-) True G141773
TU191424 lncRNA upstream 53254 7840921 ~ 7937490 (-) False LOC120573451
TU191425 lncRNA upstream 56438 7844105 ~ 7846084 (-) True G141912
TU191429 lncRNA upstream 147563 7935230 ~ 7987441 (-) False G141913
TU191440 lncRNA upstream 190207 7977874 ~ 7978789 (-) True G141920
TU191427 lncRNA upstream 198425 7986092 ~ 7987441 (-) False G141913
XM_039823362.1 mRNA downstream 1172 7757759 ~ 7780739 (-) True nectin4a
XM_039823539.1 mRNA downstream 25057 7750308 ~ 7756854 (-) True otub1b
XM_039821368.1 mRNA downstream 32065 7747779 ~ 7749846 (-) False cskmt
XM_039821369.1 mRNA downstream 32114 7747779 ~ 7749797 (-) True cskmt
XM_039823357.1 mRNA downstream 37875 7741232 ~ 7744036 (-) True LOC120573565
XM_039823415.1 mRNA upstream 234 7787901 ~ 7795793 (-) True ndufs2
XM_039823090.1 mRNA upstream 9612 7797279 ~ 7835028 (-) False kirrel1a
XM_039823092.1 mRNA upstream 9612 7797279 ~ 7835028 (-) False kirrel1a
XM_039823089.1 mRNA upstream 9612 7797279 ~ 7835028 (-) True kirrel1a
XM_039823186.1 mRNA upstream 53300 7840967 ~ 7859720 (-) True LOC120573451
TU191048 other downstream 1410818 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1410818 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 1445152 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 1446279 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 1555105 6221971 ~ 6226806 (-) False LOC120572220
unassigned_transcript_685 other upstream 49554 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 195270 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 319980 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 319980 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 677415 8465082 ~ 8465612 (-) True G142077

Expression Profile