RNA id: TU191424


Basic Information

Item Value
RNA id TU191424
length 1581
lncRNA type read_through
GC content 0.39
exon number 2
gene id LOC120573451
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7840921 ~ 7937490 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agccaatcagaggcagagtagGGCAGGTCTTTAGCGGCATGCAGAAAAGTTCATTTCATTTGTTAAACAGGAAAATTTAAAAGCAACAATTAAGTTACAATATAAACGGGCCTGACTCCgtttaaaaactggtttccggcaggttcctgttctgcagcaacATAGAACATTGAACACAATTTCGGCACACATTTTTACAGGACAATATCATGGACtagacaaatacaaacaaataaaacattaaatatggacaaacAAGACTAGAACAATACATGAACAATCAATGTGTGCAAGTGTGACTATCAAGAAGAAGTACTTTTATACTTCTCTACATCCATGTGTTCCCCCAGAGGTGCTGAAGCAAAACCTATTCAGAAacagaatttatttatttttctacaaCTTTTTTGGGGATAATTGAGTCATTGTTTTAGCATTAACCAAGctgttttttctctgtttttatatATCCATTTATTGTCTGTTGATCATTGATCATTGATCATTGATCATTTACTTGTAGAGCAAGTCGTTAGCTGTTGCTCTTTTCATGAAGGAGCCATTCTATAAAGGTGTGGCCTTCAGAGGACTTGAACGCTCGCACTACAAGTCCTCTGAAAACCACATGTGGTTTACAAAGAATTCCCCATAGCGTTGTTGCctgtttatttttatatcaGCTTGGACAAAAGCCAGGGGAACACCTGGCTCACCTGACCTCTAGCTTACCCAGTAAGAGCATGTTCCCCATGTAGGcggagtccttggcagcggcgcgggttggaatccgacctgctgccctctgctgcgtgtcaaaatgccccaaaaaataagctttaaaaacaaaaaagatattCATATTTAGCGTTGATACGCCTGTTTATAGAGCTGAAACTTGCATGGTCGGTTATGCATttgcacacagacatgcagtTCTATTGAATGTATTCTTCACCCGGGACAGTAGGCTGAAGCGCCTATCTGCTCTAACTGTTACCagcctctttctttctgtcgaGGGCTATGTGAAATGATAGAATCACTCCGGTAGAAATAGGTATCAATATTGTCGCTAAACAGCACAGCAAGAAGGTTAGATGCCTTTGTGCTGCTTTTGGATGGTTTATAAATCTAACGAAGTATATAAGTTTTGAATGCGAAATTTTAAAATCTGTATCTGTTTACATCACATATCAAGCATTCACTGTTGCTGATTTAGaggaacagtttgacatttgagAAGAAAACAAATGCTCATTCGCGTTCTTGCCACGGGTTAGATGATAAGAACTGATACCATTCTTAACATCTACATGGAAAATATGTCTAGTTGGAACCAGCAGTgcataaatactggaaacagctagtTTCCCTccaggaagaaaggaagaacatgtacctaccagcacctctaaaggaCTTTTCACTTTAGAATTTAAAACCCATTTTAATTGTAGAATTGCCTTTACTGTTACCACAGTATATCTTGTGTGTTTACTCTGTGAAAATAAAGTCACATTATGGTTTTAAGGGGGGATTTTGtaccagacttttttttttctgtaatccttCAAGTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191261 lncRNA downstream 185413 7648972 ~ 7655508 (-) False LOC120572295
TU191234 lncRNA downstream 281747 7558812 ~ 7559174 (-) True G141781
TU191231 lncRNA downstream 319128 7521213 ~ 7521793 (-) True G141778
TU191227 lncRNA downstream 322164 7518509 ~ 7518757 (-) True G141774
TU191226 lncRNA downstream 322454 7518265 ~ 7518467 (-) True G141773
TU191440 lncRNA upstream 40384 7977874 ~ 7978789 (-) True G141920
TU191427 lncRNA upstream 48602 7986092 ~ 7987441 (-) False G141913
TU191453 lncRNA upstream 68338 8005828 ~ 8007057 (-) False G141932
TU191454 lncRNA upstream 69103 8006593 ~ 8009859 (-) True G141932
TU191500 lncRNA upstream 143374 8080864 ~ 8081655 (-) True G141974
XM_039823090.1 mRNA downstream 5893 7797279 ~ 7835028 (-) False kirrel1a
XM_039823092.1 mRNA downstream 5893 7797279 ~ 7835028 (-) False kirrel1a
XM_039823089.1 mRNA downstream 5893 7797279 ~ 7835028 (-) True kirrel1a
XM_039823415.1 mRNA downstream 45128 7787901 ~ 7795793 (-) True ndufs2
XM_039823554.1 mRNA downstream 53254 7781911 ~ 7787667 (-) True fcer1g
XM_039821451.1 mRNA upstream 26486 7963976 ~ 7968040 (-) True haus4
XM_039821604.1 mRNA upstream 62007 7999497 ~ 8000769 (-) True tifa
XM_039821690.1 mRNA upstream 127733 8065223 ~ 8067060 (-) True LOC120572390
XM_039821656.1 mRNA upstream 138327 8075817 ~ 8079633 (-) False LOC120572369
XM_039821655.1 mRNA upstream 138327 8075817 ~ 8079633 (-) False LOC120572369
unassigned_transcript_685 other downstream 3627 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 53326 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1469828 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1469828 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 1504162 6336621 ~ 6336759 (-) True LOC120573735
TU191428 other upstream 45447 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 170157 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 170157 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 527592 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 579533 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile