RNA id: TU191429


Basic Information

Item Value
RNA id TU191429
length 589
lncRNA type read_through
GC content 0.44
exon number 2
gene id G141913
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7935230 ~ 7987441 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCCCTATACTAAAAAGAacaaaactgatcagaaaagaTGTATACCAAACAATGAAAAGTCCTTTATTGCCATCAGAACATGAGTGAGAAAACCAGAGACAAAATCTGACAGAGTGAGGAGTCGACTGTACAACCAgcatccacacagacacacacacacacacacacacacaaacccacgcacacacacagacagcagtcTTTCAACAGGACGTGAGGGATACAGATACATTAGGATATACAGTACTCACACAATGAGGTATCAAGGTAAACACAAACATTCCAGATAGGGCTTCGTcctccactcacacacacaaacacacacacacacacaactgaaacCAAGGTACAAATACTCAAGTGCTCGTTCATTCCTTTTAAAAACATACAGGTGAGCAGAAATGTATGACAGCAGCATCTGGGGGTCATTCTCAACCACACTCCCATTCATCGGTCTCTCAAAACCTTTGGTCACGTGGACGCTTGCATGTCACAATGTTGCCCTTTGTAATTtaatactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191425 lncRNA downstream 89146 7844105 ~ 7846084 (-) True G141912
TU191261 lncRNA downstream 279722 7648972 ~ 7655508 (-) False LOC120572295
TU191234 lncRNA downstream 376056 7558812 ~ 7559174 (-) True G141781
TU191231 lncRNA downstream 413437 7521213 ~ 7521793 (-) True G141778
TU191227 lncRNA downstream 416473 7518509 ~ 7518757 (-) True G141774
TU191453 lncRNA upstream 18387 8005828 ~ 8007057 (-) False G141932
TU191454 lncRNA upstream 19152 8006593 ~ 8009859 (-) True G141932
TU191500 lncRNA upstream 93423 8080864 ~ 8081655 (-) True G141974
XR_005641441.1 lncRNA upstream 234398 8221839 ~ 8222181 (-) True LOC120572408
TU191528 lncRNA upstream 240280 8227721 ~ 8228114 (-) True G141995
XM_039823416.1 mRNA downstream 64157 7861720 ~ 7871073 (-) True LOC120573599
XM_039823186.1 mRNA downstream 75510 7840967 ~ 7859720 (-) True LOC120573451
XM_039823090.1 mRNA downstream 100202 7797279 ~ 7835028 (-) False kirrel1a
XM_039823092.1 mRNA downstream 100202 7797279 ~ 7835028 (-) False kirrel1a
XM_039823089.1 mRNA downstream 100202 7797279 ~ 7835028 (-) True kirrel1a
XM_039821604.1 mRNA upstream 12056 7999497 ~ 8000769 (-) True tifa
XM_039821690.1 mRNA upstream 77782 8065223 ~ 8067060 (-) True LOC120572390
XM_039821656.1 mRNA upstream 88376 8075817 ~ 8079633 (-) False LOC120572369
XM_039821655.1 mRNA upstream 88376 8075817 ~ 8079633 (-) False LOC120572369
XM_039821657.1 mRNA upstream 88376 8075817 ~ 8079632 (-) False LOC120572369
unassigned_transcript_685 other downstream 97936 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 147635 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1564137 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1564137 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 1598471 6336621 ~ 6336759 (-) True LOC120573735
XR_005641432.1 other upstream 120206 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 120206 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 477641 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 529582 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other upstream 529582 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile