RNA id: TU191454


Basic Information

Item Value
RNA id TU191454
length 2722
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G141932
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8005828 ~ 8009859 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATATTTTATTCATGCAGGTCAGCTTTCAAAACAGCAATACAATGCAAAGTACTGTAAATGTCTCAGGTCCATCAAAATTGTGTAAAATAAGTTGGTTTTAATTTCATTGTATGGTTAATTGACTTCATGTGTTATATGAGTTCTAAAAAAGGTATGTCTACAAGACCTAGTGTAGATTTTACTAGTCCATTCAGTCAAATTCTTAACTCTTTCAGTTTGAACAAAGAGGTATCCTGGAAGCTTCTCTTAATTTCCAATTacaaaaaagaacaaacatCTTTCCCAGATGACAACTACGGTCATCAAACCCTGCTGGATAACCCTAGTCCAAATTCAAGTCGCTGGCATTGCCTAACCTGTCAACTATATACATTGCTTATTTCACAGCAAACTTACCGATTCAAAGAGCAGATTTACAGCTGAATGGATAGCTCTGTGTACAATGATTGATATTAGTTATGATACATACAGTGatacagttagctagctaacactcCAGAGCTACTACAAACCTCTGTAGTTAATCGTAAACTAGCAACATTTACCTAGAGAAGTTCAATGTGAGCATGTGCGACAACGTCTGCAGTACTTTCTACTTCAGTAGTCCTTAAAGCCCTTGACTTACCTGTTGACTCTGAAGGTCTCCAGCAGCCTTTGATGTCATCTCCCCCCAGATTCAAGGTAAACTAGTCTCACCTATGAGCTCAGCTGGTGGGAGTATGGCTGGAGTGTGTTACACCCTTCTTCACTTGTGCtcaaatgtgaacatgttccCAATTTTGGCACTGAAGGGGACAAGCTAAAAAAGGTACGCTAATGAATTGAGACCAGAGATATTTAAATCAGCGTGACGATCTGAACTAGTTTGTTACACGTGAGTTCATCATTAATAAAACGGATAATCATTAAGTATGGCACATGCTTATTTTTTTCCGAAGATTTAAGCAGAGTTTTCGAATAACTAAGTGGTGACACAGATGGTGTTTTAGCGCGGAGCATGACTTTGGGCACATGGGAACAACATTACTGCACAAATCCGTTTATTAAAAACAAGTTCGACAATGGACAGGTACATGTGAACGCTTTGCAGTGACTGTCCCATTAACAGTTACTTTCTACATTTGTTAAACCCTTACGTCTTAGCAGTTTAACTTTTCACAGCACCGCCACATTGAGGTTTGGTTTGCGACGGGAATGCGTAACATGATGGAACCAACGTGCAGATTAGATTTAATACTAAACATGATTCAGTTCAGTTAAATCTACAGTCACAAGTATCGCCTAGAGACTACTGAAATTATTCAGCTTTCTAAGGTCACACACAACATCAGAATACTAATTTTGTTCAacgtaaaagtacaaataaaaaagaaaaacgcctAATTCAGACGtccaccataaaaaaaaaaaaaaagtatatatacacTACAGCACAATGACAAACTAAAACAAtcagggggggaaaaaaaacgagTAAAAGCTttcccaaaataaaaacaaaaacagacgaGGACGTCGGCAATTCAGTTCCTCCTGTGAGCGTCGCAGGTGAACGTAACGCGCTCAGCCACAGACAGGAAGAGGATAGTGTCACGTGCATCAGGAGGCGGCGAGCGGCGACGCAGTCGGACGACGACCTTCACATGCCAGGGCCTTGCTTAATAAGCGTAGCGTGCAGGCGGTGGCGGAGGCAGCCGTTCTGCGTAGGGGTCCCTGGCGCGTGGAACTCCGTATGCCGGGACCCGGGAAACCGGGGAGAGTCGAGAGCGCTCGTAGGAGTAGCCATTACTGGCAGGGGGCATAGGCGCGCTAGGCGCTCTCCGGAGGGGACTGCGATCTCGGGCATAGTACGAGGACGGAGGAGGTGGGAGGGGACGACGCTCATAGGGGTCAAGCGACGAGGTCATAAGGCGGTCTCGGACGACGgctgaggggggagggggaggaggaggggcgcCAGCACGTTGGTCCTCATAGGCCATGCCATACGGACGGGCTCTGTACTTCTCATAGTAATCTACCACGCCGTATCTCTCCCTTTCACCCTCATAGGGTCGTTCAGGATAAACGGATCGtctggggggagggggtggcaGCGGAGGAGCAGGGTAACCTGGGGGTAAATGGCCGAGGCGGCCTCTCATGTAGCTGGGTGGGGGGGGAAGGTCGTGCCTCTCTCCCGGGTAACGAGGGGCCAATAGCCACCCctgtctggggaggaggggggtagTCATCCCGTTCGTCATGTCTGGGACGGCTCTTAGAAATCTGTCCAGTCCCTTGATGGCATCCATGGCCTCTTCAGAGTTAGACATGTGTACAAAAGCAAAATTCTTGACAACCGCACACTCTGTGACTGAGCCGTACTCTTCAAAAAGAGCACGGAGCTCGTCATCAGCTCCCTTTTCTACATTAGCTACATGCAGTTTGACTGCGCCCTGGTTCTTCCCGTGGCTGGCCTCCACGTTGATCGGTGTGCCGTGAAGCTTGTAGAGGTGCAGGTTCTTAATGGCTTTGGTGGCGTCCTTGCGGTCATCCATGTGGACAAAGGCGTAGTTCTTGATGATGGCACATTCTGTGACAGTGCCGTACTCCGTGAAGAGTGCCTTGATTTCCTCCTGGTCTGCTTCTCGGGGCAGATTTCCCACAAAAATCTTCACCATTGTTAAAGATCTGTTTCAGAGCAAACCAGAGAAAAGGGAATGAGAATGACataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191429 lncRNA downstream 19152 7935230 ~ 7987441 (-) False G141913
TU191427 lncRNA downstream 19152 7986092 ~ 7987441 (-) False G141913
TU191440 lncRNA downstream 27804 7977874 ~ 7978789 (-) True G141920
TU191424 lncRNA downstream 69103 7840921 ~ 7937490 (-) False LOC120573451
TU191500 lncRNA upstream 71005 8080864 ~ 8081655 (-) True G141974
XR_005641441.1 lncRNA upstream 211980 8221839 ~ 8222181 (-) True LOC120572408
TU191528 lncRNA upstream 217862 8227721 ~ 8228114 (-) True G141995
TU191532 lncRNA upstream 218321 8228180 ~ 8250562 (-) True G141996
XR_005641437.1 lncRNA upstream 247673 8257532 ~ 8258820 (-) True LOC120572405
XM_039821604.1 mRNA downstream 5824 7999497 ~ 8000769 (-) True tifa
XM_039821451.1 mRNA downstream 38553 7963976 ~ 7968040 (-) True haus4
XM_039822143.1 mRNA downstream 44886 7874651 ~ 7961707 (-) True dock11
XM_039823416.1 mRNA downstream 135520 7861720 ~ 7871073 (-) True LOC120573599
XM_039823186.1 mRNA downstream 146873 7840967 ~ 7859720 (-) True LOC120573451
XM_039821690.1 mRNA upstream 55364 8065223 ~ 8067060 (-) True LOC120572390
XM_039821656.1 mRNA upstream 65958 8075817 ~ 8079633 (-) False LOC120572369
XM_039821655.1 mRNA upstream 65958 8075817 ~ 8079633 (-) False LOC120572369
XM_039821657.1 mRNA upstream 65958 8075817 ~ 8079632 (-) False LOC120572369
XM_039821654.1 mRNA upstream 65958 8075817 ~ 8079632 (-) False LOC120572369
TU191428 other downstream 20643 7982937 ~ 7985950 (-) True G141913
unassigned_transcript_685 other downstream 169299 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 218998 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1635500 6353464 ~ 6371093 (-) True LOC120572256
XR_005641432.1 other upstream 97788 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 97788 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 455223 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 507164 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other upstream 507164 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile