RNA id: TU203208


Basic Information

Item Value
RNA id TU203208
length 1620
lncRNA type intronic
GC content 0.53
exon number 2
gene id G150170
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38497665 ~ 38501382 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaagtctcggtctcaaccctcaaagtcttggtcttaacccctcaaagtctcggtcctcaaagtcttggtctcgacccctcaaagtctcggtcgcAACTCCTCAAAGACTTGgtctcgacccctcaaagtctaaGTCTCGATCccccaaagtctcggtctcaacagctcaaagtctcggtctcgacccctcaaagtctcggtcctcaaagtctcggtctcgacccctcaaagtctcggtctacaaccctcaaagtctcggtcctcaaagtctcggtctcgacccctcaaagtctcggtcgcAACTccccaaagtctcggtctcaacccctcaaagtctcggtctcgacccctcaaagtcttggtctaaacccctcaaagtcttggtctaaacccctcaaagtcttggtctcaacccctcaaagtcttggtctaaacccctcaaagtcttggtctaaacccctcaaagtcttggtctcaacccctcaaagtcttggtctcaacccctcaaagtcttggtctaaacccctcaaagtcttggtctaaacccctcaaagtctcggtctcaaccctcaaagtcttggtcttaacccctcaaagtctcggtcctcaaagtcttggtctcgacccctcaaagtctcggtcgcAACTCCTCAAAgacttggtctcaacccctcaaagtctaaGTCTCGATCccccaaagtctcggtctcaacagctcaaagtctcggtctcgacccctcaaagtctcggtctacaaccctcaaagtctcggtctacaaccctcaaagtctcggtctcaacccctcaaagtctcggtcctCAAATTCTCGgtctcgacccctcaaagtcttggtctcaacccctcaaagtcttggtctaaacccctcaaagtcttggtctaaacccctcaaagtcttggtctaaacccctcaaagtctcggtctcaacccctcaaagtcttggtctcaacccctcaaggtctcggtctcgacccctcaaagtctcggtcctcaaagtcttggtctcgacccctcaaagtctcggtcgcAACTCCTCAAAGACTTAgtctcgacccctcaaagtctaaGTCTCGACCCCCCAAAGTCTCGGTCGCAACTCCTCAAAGACTTGgtctcgacccctcaaagtctaaGTCTCGACCccccaaagtctcggtctcaacagctcaaagtctcggtctcgacccctcaaagtctcggtctacaaccctcaaagtctcggtctacaaccctcaaagtctcggtctcaacccctcaaagtctcggtcctcaaagtctcggtctcgacccctcaaagtctcggtctacaaccctcaaagtctcggtcctcaaagtctcggtctcgacccctcaaagtctcggtctacaaccctcaaagtctcggtcctcaaagtctcggtctcgacccctcaaagtctcggtcccAACTCCCCgaagtctcggtctcaacccctcaaagtctcggtctcgacCCCCCAAAGTCTCAGTCTTGACCccccaaagtctcggtctcgacCCCTCTGATAGTCTGAGTTACCAAGATCTTCTGCGTGTTCGCGTGCTCTCGAGCCAGAAAGTCGTAACGTCATCGTAGTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641721.1 lncRNA downstream 4037 38491947 ~ 38493628 (-) True LOC120573413
TU203017 lncRNA downstream 40071 38455011 ~ 38457594 (-) False G150057
TU203019 lncRNA downstream 40071 38455011 ~ 38457594 (-) False G150057
TU203021 lncRNA downstream 40071 38455011 ~ 38457594 (-) True G150057
TU203020 lncRNA downstream 42254 38455011 ~ 38455411 (-) False G150057
TU203207 lncRNA upstream 48590 38549972 ~ 38570686 (-) True G150169
TU203240 lncRNA upstream 110865 38612247 ~ 38613055 (-) False G150196
TU203241 lncRNA upstream 110865 38612247 ~ 38612779 (-) True G150196
TU203248 lncRNA upstream 177723 38679105 ~ 38679480 (-) True G150202
TU203235 lncRNA upstream 188806 38690188 ~ 38691776 (-) True G150193
XM_039823104.1 mRNA downstream 10296 38475763 ~ 38487369 (-) True LOC120573391
XM_039823105.1 mRNA downstream 12012 38475763 ~ 38485653 (-) False LOC120573391
XM_039823121.1 mRNA downstream 158906 38285892 ~ 38338759 (-) False LOC120573402
XM_039823119.1 mRNA downstream 203474 38285892 ~ 38294191 (-) True LOC120573402
XM_039823120.1 mRNA downstream 203725 38285892 ~ 38293940 (-) False LOC120573402
XM_039823118.1 mRNA upstream 60580 38561962 ~ 38565649 (-) True LOC120573401
XM_039821972.1 mRNA upstream 104907 38606289 ~ 38627304 (-) True LOC120572654
XM_039821973.1 mRNA upstream 126642 38628024 ~ 38635576 (-) False LOC120572655
XM_039821286.1 mRNA upstream 144327 38645709 ~ 38671813 (-) False lratb.1
XM_039821436.1 mRNA upstream 233802 38735184 ~ 38743390 (-) True LOC120572225
TU202965 other downstream 219418 38246640 ~ 38278247 (-) True G150012
XR_005641707.1 other downstream 318185 38169493 ~ 38179480 (-) False LOC120573395
TU203212 other upstream 27535 38528917 ~ 38533300 (-) True G150174
TU203219 other upstream 59887 38561269 ~ 38633052 (-) False LOC120572655
TU203233 other upstream 110273 38611655 ~ 38689593 (-) True G150192
TU203220 other upstream 126375 38627757 ~ 38635593 (-) True LOC120572655
TU203245 other upstream 143184 38644566 ~ 38667971 (-) True lratb.1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU799899 True 268 lncRNA 0.41 1 CI01180000 2098541 ~ 2098808 (+)