RNA id: XM_039821430.1


Basic Information

Item Value
RNA id XM_039821430.1
length 2055
RNA type mRNA
GC content 0.59
exon number 10
gene id men1
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4435605 ~ 4447350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAAATTTCCTCAAGAGCGGGACTCGGTTCCGCACCTTCACGCAACGTCCGAGCACTGACAGATAAGCGAGACGGAGGGAAACAAGGCGGACTATGGAGGAGGGGAAAAACATGTCAGGTATTGCAGGTGAGGAGAGCATCTGAGTTGACTGACAGTGGACATCATGGGTTTGCACTCAGCCCAGAAGAAACACTTTCCCCTGCGGGGGATCGACGGTGTGGTTCAGCTGTTTGATGCTGAGCTCCGCAAGTCTGAGCCAGACCTAGCCCTTCTCTCCCTGGTCCTGGGTTTTGTCGAGCATTTCCTAGCTGTGAACCGGGTCGTCCCCATAAACGTCCCAGGGGTCCGGTTTGAACCGCTGGAGCCGGACTGCCCCACCTCCTGCTTCCCCACAGTGGAGCTGGGCATGATTTCTGCACTGTACGAGCGCTTCACGGCCCAGATCCGCGGCGCTGTGGACCTGTCCCAGTACCGGAGGACTGCTGCAGGGTCCAGCAGGGAGCTGGTGAAGAAAGTGTCAGATGTGATCTGGAACAGTCTAAGCCGCTCTTACTTCAAGGACCGGGCCCACATCCAGTCCCTCTTCAGTCTCATCACTGGTACCAAACTGGACAGCTCCGGTGTGGCATTCGCAGTCGTGGCAGCCTGCCAGGTTCTGGGTCTGAAGGACGTCCACCTGGCACTGTCTGAGGACCACGCCTGGGTGATTTTCAGCAAAAACGGCGAAGAAACGGCTGAGGTCACCTGGCACGGGAAGGGTAACGAGGACCGACGAGGACAAACCGTCGCAGCGGGAGTCAGCGAGAAGAGTTGGCTGTATCTGAAGGGCTCCTACATGAAATGTGACAGAAACATGGAGGTGGCCTTCATGGTTTGTGCCATCAACCCCTCACTGGACCTGCATACTGACAGCTCTGAGCTCCTGCAGCTACAACAGAAACTCCTGTGGTTGCTGTATGATCGAGGCGACCTGGACAGGTATCCTATGGCCATGGGCACTCTGGCAGACCTCGAAGATCAGGATCCGATCCCAGGCAAGGAGAGCCCCCTGAAAATCCACCTCAAGgctgTCAGTTCTGCTCAGCAGTACTATAACAACGAGCACATCTACCCCTACATGTACCTGGGTGGTTTCCATTACAGACACAGGGATGTGCGGGAGGCTCTCAAGTCCTGGGCTGAGGCCGCTCAGGTCATGCAGGACTATAACTATTTCCGTGAGGACGAGGAGATCTACAAGGAGTTCTTTGACATTGCAAACGACGTTATCCCCAATCTGCTGAAGgaggcggctgctgctgcagagagtcctggggagggaggggagggaggagaaggagctGACAAGGAGCACCCCAAGCAGGCAGCCGCCCTCTCCGCACTCCAGGACCCAGAATGCTTTGCCCACCTGCTGTGTTTCTATGATGGCATCTGCAAATGGGAGGAGGGCAGTCCCACGCCGGTCCTTCATGTGGGCTGGGCCACCTACCTGGTCCAGTCTCTGAGCCGCTTTGATGCTCAGGTGCGTCAGAAGGTGTCGATCATCACCAAAGAGCCAGAGGCCCAGGATGACGATGACCTGTCCAGCGACGACCCCCGGGAGGGCCGCAGACGCGGCCCCAGGAGAGAGTCCAAGCCGGATGAGCAgagctctcctcctcctgctgctcccacCTCCCCATCCAaccagcctgcagcagcagcagccgctgcaGCAGCCCAGCCCAAGAAagtgggagagggagggggccGCCGCCGCTCCTCGCAGGGCCTGCGAGGGGAAAACGCTGACGGAAAACCCAACTCCCCCAGCCCGGACTCTTCCCCCTCGTCCCAGCAACAGGTGTCCCCCTCCCCCGCCGGTCCTGTGGTCGCCTTTCAGAGTGAGAAGATGAAGGGGATGAAGGGGCTGCTGTGTGCGGCCAAGGTGAACTCCAGCGCCATCAAGCTGCAGCTCACCGCCCAGTCACAGGTCCAGATGAAGAGGCAGAAGAGCACGCCGGCCGGGGATTACTCCATGTCCTTCATGAAGCGGCAGCGCAAGTCACTCTAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190303 lncRNA downstream 104351 4331154 ~ 4332019 (-) False LOC120573533
TU190220 lncRNA downstream 116728 4318901 ~ 4319642 (-) True G141042
TU190219 lncRNA downstream 120826 4314178 ~ 4315544 (-) True G141041
TU190195 lncRNA downstream 161096 4274651 ~ 4275274 (-) False G141027
TU190317 lncRNA upstream 31080 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 31080 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 36388 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 38553 4485903 ~ 4486466 (-) True G141115
TU190332 lncRNA upstream 41950 4489300 ~ 4489504 (-) True G141117
XM_039823073.1 mRNA downstream 2487 4381783 ~ 4433883 (-) False map4k2
XM_039822102.1 mRNA upstream 39220 4486570 ~ 4498207 (-) True si:dkey-106g10.7
XM_039822103.1 mRNA upstream 39220 4486570 ~ 4498206 (-) False si:dkey-106g10.7
XM_039823547.1 mRNA upstream 71026 4518376 ~ 4528012 (-) True ecsit
XM_039823549.1 mRNA upstream 71026 4518376 ~ 4528004 (-) False ecsit
XM_039823548.1 mRNA upstream 71026 4518376 ~ 4527994 (-) False ecsit
TU190189 other downstream 161096 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 161096 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 161096 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 161096 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 280823 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 194145 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 213271 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 511329 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 652355 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1149608 5596958 ~ 5600462 (-) True G141400

Expression Profile