RNA id: XM_039821578.1


Basic Information

Item Value
RNA id XM_039821578.1
length 3234
RNA type mRNA
GC content 0.50
exon number 13
gene id sf1
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4353601 ~ 4368352 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTTTCCGTTGAGCGCCATTTTGATTAAAGTAATGTGAGGGTGGATTGTGGGCAAGATTGTTAGATATTTTCTCAATTTAAACAAATTTATACCCGAGTCGACTGACATTTGACGGCCACTAAGCCATTTGAGTACACCGAAAATGGCCACGGGTGCAAACGCAACTCCCTTAGGGAAGTTGCACCCTAGTATTGGCGCTAAACGAGGATTTGACGCTGGGCCTGGTGCAGGGAACGGGTTGATGCCAACACCAGTGCCGCCCGCATCCTTTCCTTCTCTACAAGCTTTCCAGCCCGCGATGCCAAGCGCATCTTTTCCGCAGCCACATCAGTTCATTCCTGGGACAAGTTTTTCGCCCCAGGTCCCACAACAGCCAACTGCGGTGGTCGGACTGGCCAAACCAGATTTCAGTCAGAAGAAATCACGAAAGAGGAGTCGTTGGAGCAGTGAGACTCCTGATCAGAAGACAGTCATACCGGGCATGCCCACTGTTATTCCCCCTGGACTGACCCGGGATCAAGAGAGAGCCTATATAGTCCAACTGCAGATTGAAGACCAGACTCGTAAACTGCGTACAGGAGACCTGGGAATCCCTGTTAACCCTGAGGACAGGTCTCCATCTCCAGAGCCCATCTACAACAGCGAGGGCAAGAGGTTAAACACCAGAGAGTATCGGACGCGAAAGAAGATTGAGGAGGAGCGTCACTCCCTCATCACAGAGATGGTTGGACTCAACCCTGACTTCAAGCCTCCTGCCGACTACAAACCTCCAGCCACCAGAGTCAACGACAAAGTTATGATTCCCCAAGATGAGTACCCTGAAATCAACTTTGTTGGTCTGCTAATCGGACCACGTGGTAACACGCTGAAGAACATTGAGAAGGAGTGCTGTGCCAAGATCATGATCCGGGGTAAAGGTTCTGTGAAGGAGGGGAAGGTAGGCCGAAAGGATGGACAGATGCTGCCAGGGGAAGATGAGCCTCTGCATGCCCTGGTCACTGCCAACACCATGGAGAATGTCAAGAAAGCTGTGGAGCAGATTCGCAACATTCTGAAGCAAGGTATTGAGACGCCCGAGGATCAGAATGACCTACGAAAGATGCAGCTGAGGGAGCTGGCCAGACTCAATGGCACCCTGAGGGAAGATGACAACAGGATCCTTCGTCCCTGGCAGAACTCTGAGCCACGCAGCATCACCAACACCACCCTCTGTACAAAGTGTGGTGGAGCAGGCCACATCTCCTCCGACTGCAAGTACACCAGCTCATTCGCCGCCCACAGAGCAACAGGTGGCGAGCCTCCTCAGTCAGCCCAGGACAAGGCTCGTATGGACAAGGAGTATCTGTCCCTGATGGCTGAGCTAGGGGAGGCTCCTGTCCCCACATCTGGTGGAGGACACTCCAACACCCAAGGCGGAGGGCATCGGTCCTCAGGACCCAACAATAATCAGCCACAACAGAACCGGCCTCCTTGGATGAGCTCTGGTCCGACTGAGAACAGGAACTACCATGGCATGCACGGAGGGCATGGTGGTCATGGAGGACCCCACAACTACCCTCCCCCCATGCCCAACATGGGAGGCCCCCCTATGCCCCCAAACCCCAACGGCCTGCCTCCCCCCTGGATGcagccccctcctcctcctattGGCCAGGGTCCAGGACCTCACGGACACCCTATGGGTCTGCTGCCACCTCCGATGGGCATGAtgccacctccacctcctccccccAGCAACCAGCCGCCTCCTCCCCCTTCTGGACCCCTGCCACCATGGCAACAGCAAGCTCCACCTCCCCCTCCAACCAGCAGCATGGCAACCAGTACACCGCTACCCTGGCAACAGACTTGGTCATCACAAAAGTTACATTCAAGTCAGGCCAGGTCAGATGGCTTTCCTATATCTGGTTATGataccaccaccacctccagcCCTGGCACCGGCACCCTGCCTCCATGGCAGCAGCCCCAGCAGCCTGCAGCCTCAGGAGCCCAGCCCCCACCACCCATGGGTACCCCATCCATGGTGCCTCCTCCCCCCGGTGTCCAGCCCCCATTGCCCCCAGgtgcccctcctcctccccctccaccACCTCCTGGCTCAACTGGCATGATGTATGCCCCTCCGCCGCCCCCGCCACCCATGGACCCTTCCAACTTTGTCACCATGATGGGGATGGGGGTACCAGGCATGCCCCCCTTCGGCATGCCTCCTGCCCCCCCGCCTCCTCCACCCCAGAATTAACCCTACCACAGAAGAATCGTCCTCCCACAAGAGTTTCCACCCAGCAGCACATTGTGGATGTGtgctcacagaaaaaaaatataaccagtgctttattttttattgatccTTGATATTGTGAAGACATCTCTGAAACAATGAAAAGGTTGTGTTAGTTAAATTTGTAAAGTTGCGTAACTTTAGTAAATGAGttatttttcctgtttttaaagtttgtgtTAACTCAAAGCTCCTTGTGTGCATCCAAACACTGTTGCTCTCAGGCACATGTTCTGCATTGCTCTTGTAGTTTGTTACGTTACTTGTATACCAAATAAACAACTCAAATAGCCAGTAAGTTTAATTTTTGCTCAACAGCCATCGCTTTAAATGTTTGATTCAGACCTAACTAGAATTGGATTCAAtatattgaatatatatattaatatatatagatattcaACTTGCATGATCAATTGTAAACTGCTCACTCACACATTTATACTCCTGTCATGTTCCCCGTGTTTGCTTTGAGTTAAATAAGATTAATATTTTTGTAATAACGAGATGTGAATTGTATCTTCATTCTGTCAGAAATCCTTTTTGTAGGAATGTCTCCGATTGGTTTCCAGAAATTCCCAgggttttaagtgttttttgtttttgttttttttgttacttgCCTACGTCTCAGTTGTGACAGAGTTTGAAAAAGGGGGTTTGATGCTGCGATCTGCCAGCTTCTGACCTCTTGCACTACGTGAATGCTGAGAATCTGATATATCCGTGTTTTTCTGCATCTCTTTCTGCTCTAAGACGCTGTGTgcagtgtttttgttgcttctgtATGGACAAAAATATCAGTTTTGTCCCCTGAGTTATTAGAGAAGAAAAATGTTAGTTTTACTCTGTTTCTGGAATCAGTCTGTTGTGTCATGGCACTAGCCTAAATGAAAAGCTGTTGACATTTTGCTTGGTTTAGCATTAAACTGATCCATTTCACCTTTT

Function

GO: NA

KEGG:

id description
K13095 SF1; splicing factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190303 lncRNA downstream 21582 4331154 ~ 4332019 (-) False LOC120573533
TU190220 lncRNA downstream 33959 4318901 ~ 4319642 (-) True G141042
TU190219 lncRNA downstream 38057 4314178 ~ 4315544 (-) True G141041
TU190195 lncRNA downstream 78327 4274651 ~ 4275274 (-) False G141027
TU190317 lncRNA upstream 110078 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 110078 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 115386 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 117551 4485903 ~ 4486466 (-) True G141115
TU190332 lncRNA upstream 120948 4489300 ~ 4489504 (-) True G141117
XM_039822737.1 mRNA downstream 1918 4332263 ~ 4351683 (-) True pygmb
XM_039823323.1 mRNA downstream 21844 4321764 ~ 4331757 (-) True LOC120573533
XM_039823282.1 mRNA downstream 40735 4302645 ~ 4312866 (-) True slx1b
XM_039821295.1 mRNA downstream 93788 4256635 ~ 4259813 (-) True ing2
XM_039822508.1 mRNA downstream 235217 3803986 ~ 4118384 (-) True adam19a
XM_039821583.1 mRNA upstream 830 4369182 ~ 4373673 (-) True rbm4.1
XM_039821584.1 mRNA upstream 5838 4374190 ~ 4379514 (-) True LOC120572314
XM_039821585.1 mRNA upstream 5838 4374190 ~ 4379492 (-) False LOC120572314
XM_039823073.1 mRNA upstream 13431 4381783 ~ 4433883 (-) False map4k2
XM_039823069.1 mRNA upstream 13431 4381783 ~ 4433883 (-) False map4k2
TU190189 other downstream 78327 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 78327 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 78327 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 78327 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 198054 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 273143 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 292269 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 590327 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 731353 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1228606 5596958 ~ 5600462 (-) True G141400

Expression Profile