RNA id: XM_039821585.1


Basic Information

Item Value
RNA id XM_039821585.1
length 2873
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC120572314
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4374190 ~ 4379514 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTAAATCAGAAGAAGAACAAACGGTAGCATCGTCACGGGTGCAAGCGCCATTTCACTCTTCATTCATTGCGTCGAGGCCTTCATCGTTTAAGTGGTGAGTTAAAGATTGATACACAGAACTTCATTATGGTGAAAATATTTATTGGTAACCTTGCCTGCAATACCGAACCGGCGGAGCTGCGTGAACTCTTCGAGAAGTATGGTGAAGTCTCAGAATGTGACATTGTCAAAAACTATGGTTTTGTACACATGAACAACAAATCTGAAGCAGAGGAGGCCATTCAAAACCTTCACCAGTACGAGTTgcatggctgggccatgaatgTGGAGATGAGCAAAGGGAGGCCCAAGTCCACCACCAAACTGCATGTCAGCAACCTTGGCGAAGGGGTCACCACTGATGTTCTGCGGGCCAAGTTTGAAGAGTTTGGCACTGTGGTGGAGTGTGACATAGTGAAGGACTATGCCTTTATTCACATGGAGCGAATGGAAGATGCCATGGATGCCATCAATAAGCTGGACAACACCGCCTACAAAGGCAAGCTGATGAGCGTACAGCTGTCCACCAGTCGGCTGCGCACGGCCCCCGGAATGGGAGATCATACCGGCTGCTATGTCTGCGGGAAACATGGTCACTGGTCGAAAGATTGTCGAGTCAGTCGGAACGGTAGCCACGGTGACGGCGCAAGAGGTCGCAGCGGCCGGGGCCCCCCACGTGGTCCCCCGGGTTATGGCAGGGGCAACTACAGGATGGACTCACCTCCAGGAGCTGATTACATGGGTAGCTCTGCGTATAGTCGGTCTAGTTACGGAGGTGGGATGCCGCCTCCCCCTCGTAGGCTTAGCGGCTACAGCTCTGAGCTGGGGGATAGGTACGCCAGCAGAGCACCAGGCTCCTTTGCTGAGAGGTCATCAGCCTATGACCGTGAACGTCTCTATAGCAGTGTTGACTATTATGAGAAGTACAGAGCTCGCCCTTATGGCTCAAGCTATTTCGAGGATCGTCGCATATCCtatctcccccctcccccacctcccccttcctccctctcaaAGTTCTCCAGTATAGATCCATATGATCGTCGGCCACTTCCTCCATCTTCATCCGCTGCCGCATACTATGCACGAGACCGCAGCCCAATCAGACGAGTACCAGTCTCCTCGGCTGGCTACGCCTATGAGTCAACACGGCTGTCCCCGTTGTCAGGCTCCAGGAGCTCCCACGCTCCTCCACGACCCAAGGATCGCTACGCGCCATACTAAAGCCATGGTGCCAAGGTCTGTGAACTGCAGGACTTTTGCTGTCATTTCTTCAAGTTACATGATTCCATCAGTCTGCGGGATGTGCGGCAAAGCATTTGAGTTGAGTCGGCATCTTCCAGACACCTGACATGCCAGTTGTCTGCAGATGAATCGTCCTTTCAATCATATTCACATAACCGGTTTTCAATAAGACTAAGGATGATTAGCAAAATGCGCAGTTTGACATTTATGATgtataaaacaataatttgcTCCCATGCTCTGCAGGTCTTCAGCTCAGTTTTTagccatgtcttttttttcttttcttttttcttaccTGTTACTTCCTGAAATGAAGCAATTGTTAATTGTTTGGCTTCGGTTTGTCATTTAGAAAATGTTCTTGTTTCCTTAAATATATGAAAATgtaccttctttttttattttattttttaatggaaTGAGGTTTAACCCGTGCTGCATCAGTTGCGTGTCGTGCAGAATCCTCTTGATCTGATTATATCTGGTTATGTggataaagatttttttttttttttttttaaatgatcatcATTGGTGTCTATCAATGTGCTGTGAAATGTTTTCTTACAGCTTAAACCAGTAGTTTTCACAGAGAAGTTGCTTCTTTTATGCTTGAAAGGGTGAAAGACTCAGGCAGTGGTCTAGTTGTGGGTGCGAAAGAACCTGCACTCTTCACCCTCTGAAGTACACGAATGGACTCAGTGATTCACCCAGAAGAAGACAATAGAGAAATGAATCCATATCCATGCTACTGACCTGGCTGAGTGTTCAGTTAGGACACATAATCCCACTTTGAGTTAGTATCTATGGTAAAACAAATAATCTCACATTCCAGCCTCATTGTTTGTAATTTGAGTGTGTGTctacaaaatataaaattgaTACATTTTACGACACGTAATGAGGTGTCTGCTGGTCTGAAATAGTTAAAAATAACATTAAGTgacaccaaaacaaaaatgtcacatgACATGCACTCTGCAACTTAGGAACATCTTGACTGTTTTCTTCCCAATGGTAATGTTGCACACTTTGCCCACAGCTGCCAACAGAAAATAACCTCCCATCACTTGAATTTTAGTGTGGGATGGATGTTCATTGTATCCATACAACACAGCGTAAGCAGATAAACGTGAGACAGGACTCAGGGCTTGGGCTGTATAAGTCATGAGGCACTTTCAAAGGTGCCTTTGTTCGTTTTGCATAAAGGTGGATTTgaagtttgtatttttcataCTAGCTGTAAAAGTACCAGCATACattaaaaatctaaaatgagtatgatttttaataaaaaccaaacttatTTTGGTGACATTTTTCAGTTCTTTGTTTGAAACCCAATTTGATGGTGTATTGTGGTTGCAGTGGAACTAttcactataaaaaaaaaaattgtttagaACTTTGTAAGGGCATTGAATTTATTTTTCCCACAACAGTGTATTAGAAGTGAACAATATGGATAATGTCACAGCatatgcatttttatttatatatctcAGTTGAGAGACCAAAATCCACATACTTGCTCTCGATGATGCAAAAATCAAAATATTGCCATTAAACAGTTCTACTCATtga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190303 lncRNA downstream 42171 4331154 ~ 4332019 (-) False LOC120573533
TU190220 lncRNA downstream 54548 4318901 ~ 4319642 (-) True G141042
TU190219 lncRNA downstream 58646 4314178 ~ 4315544 (-) True G141041
TU190195 lncRNA downstream 98916 4274651 ~ 4275274 (-) False G141027
TU190317 lncRNA upstream 98938 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 98938 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 104246 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 106411 4485903 ~ 4486466 (-) True G141115
TU190332 lncRNA upstream 109808 4489300 ~ 4489504 (-) True G141117
XM_039821583.1 mRNA downstream 517 4369182 ~ 4373673 (-) True rbm4.1
XM_039821577.1 mRNA downstream 5982 4353601 ~ 4368208 (-) False sf1
XM_039823073.1 mRNA upstream 2291 4381783 ~ 4433883 (-) False map4k2
XM_039823069.1 mRNA upstream 2291 4381783 ~ 4433883 (-) False map4k2
XM_039823071.1 mRNA upstream 2291 4381783 ~ 4433883 (-) False map4k2
XM_039823072.1 mRNA upstream 2291 4381783 ~ 4433883 (-) False map4k2
XM_039823068.1 mRNA upstream 2291 4381783 ~ 4433883 (-) True map4k2
TU190189 other downstream 98916 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 98916 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 98916 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 98916 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 218643 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 262003 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 281129 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 579187 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 720213 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1217466 5596958 ~ 5600462 (-) True G141400

Expression Profile