RNA id: XM_039821604.1



Basic Information


Item Value
RNA id XM_039821604.1
length 1155
RNA type mRNA
GC content 0.49
exon number 2
gene id tifa
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7999497 ~ 8000769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCAGCATTGCACTGGGTCCTCGAGGAGTGACGAAACTCCAGAGAGTAGAAGGAAAACAACGGTCGAGCGTATTGTTTTCTTTTGGAGCAGCACCACCGTTACTTATAAGTCAGCTGTTGCTTAGAGTACTCTACATTTGATCTAGCTTTTCTGTGGACGGAGTATCTATCTACTTCGCCAAATGAAAAAAACTTCAACATTCGGACTGTCATCACTGGAAGTCAATAGATCGATCTAGTTCTAGATACTGATTTTCATcaggagcttttattttgattttttttttttttctctcatgatGAATGTCTCCCAGACAATGGAGACGGAGGAGGATCTCCTGACCCGTCTCCACGTCCAACTGTACCACCCTCAGCAGAGTTGTAAGGGCCTTTTCGAGCTGCTTCCTCTGGGGAACAAGAGCAAGCACTCGGCAGACGAGCCTCTCCGGCTGGGACGCGACGCCCAGGGCTGCACCTTCGCCCTGGTCGACGCCCGGGTGTCCCGCAAGCAGCTGGCCCTCCACGCCTACCGCACCCCCGAGAGCCCAGACTTGCTGTTCGCCATCCAGAACCTGAGCCAGAGGGGACGTCTGTCGGTGAACAGCTCGGCGCTGGGCTTCCTGGAGAGGATGGATCTCCCGGACAAGGCCCTGGTCCGGTTCGGAGAGTATGAGATGCTGATCATCCGTGAGTCCGGCGAGGCCAAGGGCAGCTTCGAGGTGGAGTTTGAGGTGCTGGCAGTGCCTCCGTCCAGAGAGACATGCATGTACGTGCCTAGTATGAGCCCCGTCATGGAAACAGGCTGCTCACGTGTGATTAACGGTCTTCCAGGTGAACTCAGAGTAGGCCTCCTCGGCCCCCTTGAGACCGATGAGACTCTCATGTTTAATTCCTGATGTGACTTTTAACTTTGTTATTGACTTGCATTTGATTCAGTACAAACGGCAACGTGTAGGCTATGACTGGATCTCTCCTTGTAATGTGAAATCATAGTATTCTTATTTAGGTATTATTTTGCACCCTGTTACTCTATTACTCCATGTATAAGTTAAAGACCTGTGATCCTATATTGTAATAACAGCTACTTTTAAAGTATAATACAGCTATTTGTTTCAACATTTCAACTTGAGCACATTAAAGTCTCTTTTTGTAAACA

Function


GO: NA

KEGG:

id description
K23826 TIFA; TRAF-interacting protein with FHA domain-containing protein A

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191429 lncRNA downstream 12056 7935230 ~ 7987441 (-) False G141913
TU191427 lncRNA downstream 12056 7986092 ~ 7987441 (-) False G141913
TU191440 lncRNA downstream 20708 7977874 ~ 7978789 (-) True G141920
TU191424 lncRNA downstream 62007 7840921 ~ 7937490 (-) False LOC120573451
TU191425 lncRNA downstream 153413 7844105 ~ 7846084 (-) True G141912
TU191453 lncRNA upstream 5059 8005828 ~ 8007057 (-) False G141932
TU191454 lncRNA upstream 5824 8006593 ~ 8009859 (-) True G141932
TU191500 lncRNA upstream 80095 8080864 ~ 8081655 (-) True G141974
XR_005641441.1 lncRNA upstream 221070 8221839 ~ 8222181 (-) True LOC120572408
TU191528 lncRNA upstream 226952 8227721 ~ 8228114 (-) True G141995
XM_039821451.1 mRNA downstream 31457 7963976 ~ 7968040 (-) True haus4
XM_039822143.1 mRNA downstream 37790 7874651 ~ 7961707 (-) True dock11
XM_039823416.1 mRNA downstream 128424 7861720 ~ 7871073 (-) True LOC120573599
XM_039823186.1 mRNA downstream 139777 7840967 ~ 7859720 (-) True LOC120573451
XM_039823092.1 mRNA downstream 164469 7797279 ~ 7835028 (-) False kirrel1a
XM_039821690.1 mRNA upstream 64454 8065223 ~ 8067060 (-) True LOC120572390
XM_039821656.1 mRNA upstream 75048 8075817 ~ 8079633 (-) False LOC120572369
XM_039821655.1 mRNA upstream 75048 8075817 ~ 8079633 (-) False LOC120572369
XM_039821657.1 mRNA upstream 75048 8075817 ~ 8079632 (-) False LOC120572369
XM_039821654.1 mRNA upstream 75048 8075817 ~ 8079632 (-) False LOC120572369
TU191428 other downstream 13547 7982937 ~ 7985950 (-) True G141913
unassigned_transcript_685 other downstream 162203 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 211902 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1628404 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1628404 6369698 ~ 6371093 (-) False LOC120572256
XR_005641432.1 other upstream 106878 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 106878 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 464313 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 516254 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other upstream 516254 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile