RNA id: XM_039821652.1


Basic Information

Item Value
RNA id XM_039821652.1
length 1555
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC120572369
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8075817 ~ 8079633 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttaaaagtcaatTTCTTAATTCAGCTTGTGCAGAACAAACATGAACAGCATCTGCGAGGGAAACCACTACATTCTGAAAATAGATTGCATAATATACTGTAGAAAATAGGAAGTTCCTCGCTTACAGAGCGTGAGaatgttaagtttaaaatacagACTGTCTGCTAAAGTCATTTTATGATAGAGATCAACCAAGGTTATGTGAATCTTATTCTGTATTAGTGGATTTGCTTCGACCGTCTTACATAAAGGCCTCGATGAACCTGATGTAAATAGTTTTCAATTGGTTTGAACATTACTCTGGTAACTTAATAGGAAATGACCAAGAATAACTTGGTCTGGTATCTGTTGAGGCGATCATTTGTTGTCAAAGACTCCACCTCTGAAgttgagagcagccttcctggagcACAGTTAGACATCACAGAGCTGTGATCATACGCACCACGATGAAACGGAGCCTGATAACAGCTTTAATTCTTTGCAGCATCAgcTGGATCTCTGTCTCAGGTTCTGAGTCTCACACTGAGACTGTGGAGGGTCGGCCGGGTGGAGAAGTCACACTCACATGCTCTAACCCGTCCAACCGAGACGCTCTAACATTCTGGTTGAGAGTGGTCAACAGAACCAAGGCCAGCTGGATCTCCACGATGATCAGCTCTACAGGAACACCTTTATACAGTGATGTAAATCAAAATGGAAGATTCAACATGAGTACCAACATCTCCACTCTCTTTCTCCAAATCAAACATGTGGATGTATCTGACTCTGGACTGTATTTCTGTGGATTTTACATCGAAGGACGTTATAATTTCAGCGCGATACACGTCAATGTTAAAGACAGTGATGATTCTCATGACGACACCAACAGGAAGTCTGAAATTCTCAAGCCCATCGATGAAAAAGgcAGCGATGAATCTCATGACGACGACAGGAAGTCTGAAACAGAGTCTGATGGAACAGCAAAGCTGATGATTTTGATCCTGGGAGCTCTGACTGTTCTCCTCTTAATGGTCATCATTGGTCTGGTTGTTACAATCAGGAAACTTCAGAAAGCTGCCAATGAAGAACAGAATCCACAACAGCCTGAGAACCGGGCCTCTGAAGAGCTGAACTACGCAGCTGTGGCTTTCCGtccaaaaacaagaaaaacaagagaAGTGGAGCCCAATGTTGTGTATGCTTCTACTAGATAGACTCAGGATGAAACCAGAGAAGAGGTTCAGAATAAAACTGATGCTTTATCATATTCATCtgccaacccggtctcacggcagtaagtgaaatggtcacgttattttgaatctattgatacgtgttcactgggatgtttgtgttttttttcgtggtggccagcaggAAATGGTCTATAgggagattaacggggaaagcaaacgccacaccccaggggaggacgcctcacacgccggtaGACGGCCGCGACGGGATGgcgaacggggaaagcaaatgCCACAAcccgggggaggacgcctcaaatgcctccttacgcggattttcagcatttcatactactcgctgccgtagtcgt

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191454 lncRNA downstream 65958 8006593 ~ 8009859 (-) True G141932
TU191453 lncRNA downstream 68760 8005828 ~ 8007057 (-) False G141932
TU191429 lncRNA downstream 88376 7935230 ~ 7987441 (-) False G141913
TU191500 lncRNA upstream 1232 8080864 ~ 8081655 (-) True G141974
XR_005641441.1 lncRNA upstream 142207 8221839 ~ 8222181 (-) True LOC120572408
TU191528 lncRNA upstream 148089 8227721 ~ 8228114 (-) True G141995
TU191532 lncRNA upstream 148548 8228180 ~ 8250562 (-) True G141996
XR_005641437.1 lncRNA upstream 177900 8257532 ~ 8258820 (-) True LOC120572405
XM_039821690.1 mRNA downstream 8757 8065223 ~ 8067060 (-) True LOC120572390
XM_039821604.1 mRNA downstream 75048 7999497 ~ 8000769 (-) True tifa
XM_039821451.1 mRNA downstream 107777 7963976 ~ 7968040 (-) True haus4
XM_039822143.1 mRNA downstream 114110 7874651 ~ 7961707 (-) True dock11
XM_039823416.1 mRNA downstream 204744 7861720 ~ 7871073 (-) True LOC120573599
XM_039823328.1 mRNA upstream 20022 8099654 ~ 8102359 (-) True LOC120573539
XM_039821702.1 mRNA upstream 28015 8107647 ~ 8112684 (-) False LOC120572400
XM_039821680.1 mRNA upstream 52253 8131885 ~ 8134082 (-) True LOC120572382
XM_039821650.1 mRNA upstream 54867 8134499 ~ 8136411 (-) True LOC120572367
XM_039821674.1 mRNA upstream 61035 8140667 ~ 8143566 (-) True LOC120572376
TU191428 other downstream 89867 7982937 ~ 7985950 (-) True G141913
unassigned_transcript_685 other downstream 238523 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 288222 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1704724 6353464 ~ 6371093 (-) True LOC120572256
XR_005641432.1 other upstream 28015 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 28015 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 385450 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 437391 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other upstream 437391 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile