RNA id: XM_039822036.1


Basic Information

Item Value
RNA id XM_039822036.1
length 3012
RNA type mRNA
GC content 0.51
exon number 12
gene id senp3b
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6343629 ~ 6361111 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTGTAGTTGACATGAGAGCGAAAAATCTGCAGTGATCCGCCGGCTCAGCGCATCTCTCGTTTTCTTACAGACCTTTTCAATTGAAATAGATTCTTCTGTGTAGATTTCACGTACATCGTTGGCTGTATTCTACCATTTATGTTAAGCGTATGCGTTTTTCTCTGAACCGGAAGACCTAAAAGAAATCAAAGTTCGCAAGGAGGTGACATCTGGCTGCTCCACACCTGACTTCATTGAATGAGGTTCAACACCAATTAGCATTTGTTTTGGTTCGATACCCATACAAATTAAACACGCCCAACATTCAGTCGGAAGCAGCTGGACACATTCATATAAATCTGCAGGCTAACGGTGACGAGCTGGCGCAGGTCGTGGGTTGTCCGTGGATAATGCGAGACAGTGGCGGTAGCCTGGCCCAGAACCGCTGGCAGGGAGACCTGGGTCTGACCGCTGTGGGGCAAGACGACACAGGAGGAGGTGGGATCCCTGGAGACCACCTCATTGTCCCGGTGTCAGGCCACAGTGTACCCAGTCCCATGCACCTCAGACTGGGGCAGAAAGAGAAGGTGTGGACAGGCGAGTAtgtggaggaggatgaggatgaagacGAGGACGGTATGGGTATGGGTATGATCAAGCCAGTAGCTGATGAGGATGAAGAAAACAATCTGGATGGGGAGGACGAGTTAGAGTTTGAGGGCAAGGGTTGGGATAACAatgaggaggacgaggaggaggaggaggaagaagatgatgaagaggaggaggaggatgaggtggaagatgaaggagaggaggaagagttgGAGTGGGAGGTCCCAGAATTTCCCTCCCAGTCCACGCAGCACCCTCATTCACAGCAGCAACACCACCAACATCACGGACCCCAGCAGAAGGCAGAAGAGGGCGGTGACGTCCCTGGAGAGCACCCGGTCTCCCCGGCCAAAGCCGGGGACGTGTTCAGGTCCCACCTCAGCAGGTACAGGGCCCTGCGGAGGCTCCGGCGCTGGCAGCGCTTGCGATCCCACGGCGGCCTTGGATTTCGGCTAACCAAGCACTGGAAGAGCTGGCGCCAGCGGGCGCAGTGGGTATGCTCCCAAGGGTACCGGTACAGCCAAAGAGGGCGAAGGCACAATCTGTACGGCAAGCAGAGGAGGACAAAAAGGTATCGGCAATCGCCATACTCCGACGGAGAGGACGACACCAACGATGAGAGGTTCACCGCGTCGGATAGAGATGAACACATGAATGGCTGCTCTCCAGTCAAacaagaggacagagggaggcgGGAAGTGGAGGTCAAACCAGTGGAGCTGGCCCTTACTGAGGAACACATGAGTTTTGTGACTGGTATTCTTGAAGAGTCTCTGCAGCAGTACGGCAGCTTGATCCCCGTCCATGTGGATGACATTGTGGAGAAGCTTCAGGACATCTTCAGCGAGAGCTTCTCACAGCCACACAGGAAAGCAGTGGTCCAGCACCTAATACAATCCTTCCAGCGGTCGTCGGGCTCGTCCCTGGCTAAAACATTCAGAGTCAATTACAAACGCCACGTTCTGACCATGGATGACCTGGGCACTCTGTACGGACAGAACTGGCTCAACGACCAGatTATGAACATGTATGGTGACCTGGTCATGGACTCTGTGCCAGAGAAGGTTCACTTTTTCAACAGCTTCTTTTATGATAAGCTAAGGACAAAAGGCTATGATGGAGTCAAACGGTGGACCAAAAATGTTGACATCTTTCAGAAGGATCTGTTGTTGATCCCCATCCACCTGGAGGTCCACTGGTCCCTGGTCAGTGTTGACATTCCTCGTCGAGCCATCACATACTTTGACTCTCAGCGGACTCTCAACAGACGCTGCCCGAAGcaCATTTTTAAGTATCTGCAAGCGGAGGCCATCAAGAAAGACCAACAGGACTTTTTGGCGGGATGGAAAGGCTTTTTCAAAATGAATGTGGGTCGTCAAAACAACGACAGTGACTGCGGGGCTTTTGTGCTACAGTACTGCAAGTGTCTGGCACTAGGGCAGCCGTTCAGCTTTGGCCAGCTGGATATGCCCCGGCTGAGGAGGCAAATGTACAAAGAACTCTGTCACTGCAAGCTCACCCTGTGAccctccacccccaccctcGGCCCGCCATCTCCACCTGCTCCCGCCCTTACACTTAACAAGACGGAGGGACAATGCCATGACAAGAAGAGGGCACGGGGGAGCAAACGATggactggaaaaagagaaacttttcagaaactttatttttctctgccAACATCCAGAGAAATTCCTTCTTCTATTGTAGGTGATGTCATTGTTTcactttttgtctctctttgctTCCCTCTCTCCACCCTTTTTTGAAAACTCCTGATTTAATTTCCATGTCATGGTAATTCCTTTGTGGTTGACAGAGGCCAAGGCTAGCTTCCGTTTTGGGAAATGTGCTGACCTTCCATCCTATCGTagtccaccttttttttttctttcagtctgAATGGGAGCATGAAGAAGATTATATCTAAAGAATACAGTCCAGATGAAGGGTCGGACCCCAGTTAGTCCCAACCTCCAGTACTACTTTGACTTCAGATGCCTGAACAGTGAGTGCAGAGGTGGCGTGGGTGGACGGCAAAATCATTTGAACCAGTCTGTGTAAGCTTGTGGTTAAATGGTACTAGTGGATGTACCCGCCCTCCATCCATGCAGTCCACACAGTAGGTTGAAAGAAGTGAGAATCTCAAAAAAAACGTTACCACACCCGACATAAAATACACTTCCCCCGTGCTACAGCCAATGTTACGTTGGCCAGTCCATCGATCCAGTCGTCACGTGATGTTTGCCACTGTAGCGCGACGTGACCTTTCCGATGTACATTTGTTAAACGATTTCCTCCAAGGTGTTTAGAAGAATTTTCAAGTGAAAATGGAGCTTGCTAGTTGACGCTGCCATATCGACGTCAGAAAATGCACTTCCAGCGCGTGAGGAGCCATTctagtgcttttttt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08593 SENP3; sentrin-specific protease 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191040 lncRNA downstream 33734 6308898 ~ 6309895 (-) False sox19b
TU191020 lncRNA downstream 77046 6266151 ~ 6266583 (-) True G141613
TU191019 lncRNA downstream 77604 6265440 ~ 6266025 (-) True G141612
TU191007 lncRNA downstream 137899 6199308 ~ 6205730 (-) False gal3st4
TU190999 lncRNA downstream 186216 6156052 ~ 6157413 (-) True G141601
TU191049 lncRNA upstream 14887 6375998 ~ 6378372 (-) False tbc1d14
TU191105 lncRNA upstream 94828 6455939 ~ 6511995 (-) True G141667
TU191122 lncRNA upstream 197187 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA upstream 216066 6577177 ~ 6578755 (-) True G141688
TU191192 lncRNA upstream 1034048 7395159 ~ 7462473 (-) True G141741
XM_039822037.1 mRNA downstream 2892 6331688 ~ 6340737 (-) True eif4a1a
XM_039823555.1 mRNA downstream 27812 6309459 ~ 6315817 (-) True sox19b
XM_039821509.1 mRNA downstream 99960 6237573 ~ 6243669 (-) True tm4sf21b
XM_039821425.1 mRNA downstream 112332 6226997 ~ 6231297 (-) True LOC120572220
XM_039823015.1 mRNA downstream 137843 6186311 ~ 6205786 (-) True gal3st4
XM_039823095.1 mRNA upstream 4860 6365971 ~ 6367776 (-) True LOC120573386
XM_039821491.1 mRNA upstream 8575 6369686 ~ 6371100 (-) False LOC120572256
XM_039823420.1 mRNA upstream 14861 6375972 ~ 6416457 (-) False tbc1d14
XM_039823419.1 mRNA upstream 14861 6375972 ~ 6416452 (-) True tbc1d14
XM_039823422.1 mRNA upstream 14861 6375972 ~ 6406047 (-) False tbc1d14
XR_005641775.1 other downstream 6870 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 7997 6335494 ~ 6335632 (-) True LOC120573734
XR_005641400.1 other downstream 112332 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other downstream 116823 6221971 ~ 6226806 (-) False LOC120572220
unassigned_transcript_683 other downstream 314707 6028841 ~ 6028922 (-) True trnas-uga_22
TU191047 other upstream 8587 6369698 ~ 6371093 (-) False LOC120572256
TU191399 other upstream 1420833 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 1476110 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 1621826 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 1746536 8107647 ~ 8112684 (-) True LOC120572400

Expression Profile