Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006830 |
| length | 2150 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | XLOC_003482 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 25619892 ~ 25631442 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042417 | dopamine metabolic process | biological_process |
| GO:0042424 | catecholamine catabolic process | biological_process |
| GO:0042135 | neurotransmitter catabolic process | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0006584 | catecholamine metabolic process | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0008168 | methyltransferase activity | molecular_function |
| GO:0008171 | O-methyltransferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016206 | catechol O-methyltransferase activity | molecular_function |
| GO:0102084 | L-dopa O-methyltransferase activity | molecular_function |
| GO:0102938 | orcinol O-methyltransferase activity | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040724-164 | Predicted to enable catechol O-methyltransferase activity. Predicted to be involved in catecholamine catabolic process; developmental process; and dopamine metabolic process. Predicted to act upstream of or within catecholamine metabolic process; methylation; and neurotransmitter catabolic process. Predicted to be located in extracellular region. Is expressed in several structures, including digestive system; gill; heart; immune system; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autoimmune disease of skin and connective tissue (multiple); bulimia nervosa; cognitive disorder (multiple); and reproductive organ cancer (multiple). Orthologous to human COMT (catechol-O-methyltransferase). |
| ensembl_id | ENSDART00000033702 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006823 | lncRNA | upstream | 71386 | 25547854 ~ 25548546 (+) | True | XLOC_003479 |
| TCONS_00006816 | lncRNA | upstream | 137695 | 25481107 ~ 25482237 (+) | False | XLOC_003476 |
| TCONS_00006818 | lncRNA | upstream | 137695 | 25481115 ~ 25482237 (+) | True | XLOC_003476 |
| TCONS_00008402 | lncRNA | upstream | 360935 | 25256812 ~ 25258997 (+) | False | XLOC_003467 |
| TCONS_00008616 | lncRNA | downstream | 197928 | 25829370 ~ 25830337 (+) | True | XLOC_003487 |
| TCONS_00008617 | lncRNA | downstream | 557075 | 26188517 ~ 26196145 (+) | True | XLOC_003489 |
| TCONS_00008618 | lncRNA | downstream | 594640 | 26226082 ~ 26234069 (+) | True | XLOC_003490 |
| TCONS_00006845 | lncRNA | downstream | 764471 | 26395913 ~ 26398030 (+) | False | XLOC_003492 |
| TCONS_00006846 | lncRNA | downstream | 765197 | 26396639 ~ 26398487 (+) | True | XLOC_003492 |
| TCONS_00006828 | mRNA | upstream | 1349 | 25596038 ~ 25618583 (+) | True | XLOC_003481 |
| TCONS_00006827 | mRNA | upstream | 4848 | 25583950 ~ 25615084 (+) | False | XLOC_003481 |
| TCONS_00006824 | mRNA | upstream | 43733 | 25560072 ~ 25576199 (+) | False | XLOC_003480 |
| TCONS_00006831 | mRNA | downstream | 2599 | 25634041 ~ 25679133 (+) | False | XLOC_003483 |
| TCONS_00006832 | mRNA | downstream | 6730 | 25638172 ~ 25679721 (+) | False | XLOC_003483 |
| TCONS_00006833 | mRNA | downstream | 6786 | 25638228 ~ 25675690 (+) | True | XLOC_003483 |
| TCONS_00006834 | mRNA | downstream | 49893 | 25681335 ~ 25689873 (+) | False | XLOC_003484 |
| TCONS_00006835 | mRNA | downstream | 49899 | 25681341 ~ 25689754 (+) | True | XLOC_003484 |
| TCONS_00006817 | other | upstream | 136962 | 25481107 ~ 25482970 (+) | False | XLOC_003476 |
| TCONS_00006814 | other | upstream | 141514 | 25477743 ~ 25478418 (+) | True | XLOC_003475 |
| TCONS_00006802 | other | upstream | 317375 | 25296376 ~ 25302557 (+) | False | XLOC_003469 |
| TCONS_00006788 | other | upstream | 492070 | 25096197 ~ 25127862 (+) | False | XLOC_003464 |
| TCONS_00006785 | other | upstream | 579295 | 25038273 ~ 25040637 (+) | True | XLOC_003461 |
| TCONS_00006838 | other | downstream | 446505 | 26077947 ~ 26078061 (+) | True | XLOC_003488 |
| TCONS_00006853 | other | downstream | 973169 | 26604611 ~ 26614587 (+) | False | XLOC_003495 |
| TCONS_00006865 | other | downstream | 1889014 | 27520456 ~ 27520573 (+) | True | XLOC_003503 |
| TCONS_00006890 | other | downstream | 3720659 | 29352101 ~ 29352221 (+) | True | XLOC_003521 |
| TCONS_00006893 | other | downstream | 3935305 | 29566747 ~ 29571528 (+) | True | XLOC_003523 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000306_03214469_03216852.mRNA | True | 824 | mRNA | 0.48 | 5 | CI01000306 | 3214469 ~ 3216880 (+) |
