RNA id: TCONS_00069637


Basic Information

Item Value
RNA id TCONS_00069637
length 3410
RNA type mRNA
GC content 0.48
exon number 23
gene id XLOC_035496
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13389115 ~ 13412597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTGAAGAGGAAGAGGTGCCGTTGATGAAGAGTGAACGGGCCGGCAGTCAGCGGTCCAGCTGTGACTCAGCCCTGCAGGTGCATCTGTACTACAGTCCCAGTTTAAACTCAGAGACCACCTTCAGCATACCCACCGGACATGTGACAGCTGAGAGCGTGTGTGTGCTCGCTGCTAAAGCCAGTGgAATTCTTCCTGTGTATCACAACCTCTTTGCTTTGGCATCAGAGGATCTTTCATACTGGTATCCACCAAATCATCTGTTTAAGAGTGAGGAGCCCGTCAAAGTTTACTATAGAGtgagGTTTTTCTTCTCAAGCTGGTTTGGTCAAGAGTCGAGAGCATCGTACCGCTTTAGCCTCAGCAAGGGACGAATCTTTGCTGTGCTGGACTATGCTGTCATTGACTATGTTTTTGCTCAATCCCGCAGTGATTTTGTGACTGGATGTGGTGGGATTTCTCCTGCATTGAGTTTGCAGCAGGAATGTTTAGGTTTGGCAGTGCTGGATCTGTGGCGTTTGGCCAAAGAGAGAAACCAGAGCCTTGCAGAGATCTGCAATACAACAAGCTACAAGTCCTGCCTCCCGGAGACTCACCGACAGGACATCCAGCGCATGAACCGCCTGGCGCGATATCAGATCCGCAAAACACTGAAGCGCTTCCTGAAGAAGCTGGGCAAGTGCTCGGCTGGAGAGCGAAGCCTGAAGCTCAAGTACCTGATGAAGCTGAGTGAGCTGGAGCCGGATTATGGTTCAGAGAGCTTCCCCCTCCACCACTCCGGGTGGTTGGAACAGAGCGAGCAGCAGAGAGTTCTAGCCGTCAAAGTGTCCGGAGAGGGAGGCATTCAGATacagaaaacagacagacagGAATGGCAGACATTCTGTGACTTCCCCCAGATCATTGACATTAGCATTAAGCGTCTCTGTCAAGAGCAGATGCCTCTGGAAGGAAGGGTGGTCACACTCACGCGCCAGGATGACCAGTGCATGGAAGCTGAGTTTCAAACCCTGACAGACGCCCTTTCCTTTGTATCTCTGGTTGATGGATATTTTAGACTGACCACAGATTCAACTCACTATTTCTGCGCAGAAGTGGCCCCACCAAGCCTGCTGGAGGACATACAGAATTACTGCCACGGCCCGATCACGTCAGAATTTGCGGTGCACAAGCTTAAGAAAGCTGGAGGCAAGAATGGGATGTTTCTTTTACGCCACAGTCCCAAGGAATTTGACAAGTACTTCCTCACAGTTTGTATACAGACTCCTTTGGGGATGGATTACAAGGACTGCCTGATAGAGAAAAATGAGAAGTTCAGTCTGGCTGGGATCCACAACTCATTCATCAATCTGAAACAGCTCATCGACTTCTATCAGCTCAGTACGCTATACGTTTCAGACATCCCTGTCACCCTGGGCAAGTGCTGCCCACCCAGAGCAAAAGAGCTCACAAACATGATCATCATCCGTAACAGCAGTATGACTGAGATACCCAGTTCCCCCACCTTACAGAGACACAAACCAAGCCACATGCAGTTCCACATGATTAAACATGAGGACCTCATCTGGAGTGAAAGTTTAGGTCAAGGTTCCTTCACGCACATCTTTAGAGGTAGTAAAATAGACCAGAGGGATGGAGGAACACACTCCACCGAGGTCCTTCTGAAAGTCCTGGATGCAAATCATAAAAACTGCTGGGAGTCTCTTTTCGAGGCGGCCAGTTTGATGAGTCAAATCTCCCACAGGCACCTTCTTTTGGTGTATGGCATTAGTGTGCACAAATCCAAAAACATCATGGTGCAGGAGTTTGTGAAGCACGGCGCACTGGACCTGTACCTGAAGAGGAGCATGTGTGTCTCAGTCAGCTGGAAACTAGATGTGGCCAAACAACTGGCCTGTGCTCTTAACTTCCTGGAGGAGAAGAATATTGCACATGGGAATATTTGTGCAAAGAATCTGCTGTTGGTCCGAGAGGGCGACTCACCCTTCATTAAACTGAGTGACCCTGGCGTCAGCATGTCCTTGCTGGGCAAAGATGTGGTGTTGGACCGAATCCCATGGGTGGCCCCAGAAGTTCTGGATACACTTGAGATTGAACTGGAGTGTGACAAGTGGAGCTTTGGGACAACGCTGTGGGAGATTTTCAATGGTGGAGAAGCTCCATTACAGGGCCTGGACCTCATGCAGAAGCTGCAGTTTTATGAGAACTTCTCGAACCTTCCAACGCTGGAGTGGACTGAACTGGCTGAGCTGATCTCTCACTGTATGCAGTACCAGCCTGAGCTCAGACCGTCCTGCAGGAGCATCATCCGACAGCTGAACAGCCTCATCACTTCAGATTATGAGATTCTTCATGCGACTGACACACTGCCTGAAAGCAATGGCTTCTGGAAGAAACTGAACATATTCAAAAAGCAACAGGAGGATGTTTTTGAGGAGAGATACCTGCGATTCATCTCTGTTCTGGGAAAggGTAACTTTGGCAGTGTTGAGCTTTGCCGTTATGATCCATGGGGTGATAACACTGGAGAACTGGTGGCTGTGAAGGAACTTCAGTCTAACAAGCAAGCCACAATGGCAGATTTCCAGAGAGAAATCCAGACCATCAGCTCCCTGCACTGTGACTACATTGTCAAATACAAGGGCATCTGCTACAGCACAGGTCGGCTGAGCACAAAACTGGTGATGGAGTATCTTCCATACGGCAGTCTCATTGGTTATATGGAGAAACACAGACACAATGTGGGCAATCGCAAACTATTGCTATTTGCCTCGCAGATATGTAAGGGAATGGAGTACCTGCAAAGCATGCGTTACGTTCACCGTGATCTAGCTGCTCGCAATATTCTAGTCGCCAGCGACAATCTGGTCAAAATTGCAGATTTCGGACTGACCAAGATCATCCCGGTGGATAAAGAGTACTACCGTGTCACACAGCCAGGAGAAAGTCCTGTTTTCTGGTATGCACCTGAATCCATCTCAGAACTGAAATTCTCCCACAAGTCAGATGTGTGGAGTTTTGGCATTGTTTTACATGAGCTCTTTTCTTACTGCGACATCAGTCAAAACCCCAAAAAGTTGTGCATCCAGAAGATTGGCAGATATGTCCATAGTCCATCCATGGCCATCCATCTCCTCACTCTTCTCAAGAATAACTGGAGATTACCAGCTCCAGCTCAGTGTCCACTAAAGgtgCACAGTATTATGATGCAGTGCTGGGAATTCAACAGTGAGAACAGGCCGAGCTTCTCCTCTTTAAAGGATCTGATTGAGAATAGCCTGTTAGATGAAAGAGAGGGATGTAAAGGGTAAACTCAGAGTTAACTTCAGCAGATCAgttaatttcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0001779 natural killer cell differentiation biological_process
GO:0030217 T cell differentiation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005856 cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04217 Necroptosis
ko04550 Signaling pathways regulating pluripotency of stem cells
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04062 Chemokine signaling pathway
ko05200 Pathways in cancer
ko05203 Viral carcinogenesis
ko05223 Non-small cell lung cancer
ko05166 Human T-cell leukemia virus 1 infection
ko05161 Hepatitis B
ko05162 Measles
ko05169 Epstein-Barr virus infection
ko05340 Primary immunodeficiency
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-070725-4 Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within T cell differentiation in thymus and natural killer cell differentiation. Predicted to be located in cytoskeleton and membrane. Is expressed in male organism and thymus. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia; acute megakaryocytic leukemia; adult T-cell leukemia; and juvenile myelomonocytic leukemia. Orthologous to human JAK3 (Janus kinase 3).

Ensembl:

ensembl_id ENSDART00000049469

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069631 lncRNA upstream 275586 13107023 ~ 13113529 (+) False XLOC_035494
TCONS_00069629 lncRNA upstream 291260 13093574 ~ 13097855 (+) True XLOC_035493
TCONS_00072156 lncRNA upstream 325977 13027760 ~ 13063138 (+) False XLOC_035489
TCONS_00072157 lncRNA upstream 325977 13040694 ~ 13063138 (+) True XLOC_035489
TCONS_00069627 lncRNA upstream 348539 13027524 ~ 13040576 (+) False XLOC_035489
TCONS_00072158 lncRNA downstream 105925 13518522 ~ 13597892 (+) False XLOC_035498
TCONS_00069642 lncRNA downstream 105996 13518593 ~ 13551129 (+) False XLOC_035498
TCONS_00072159 lncRNA downstream 106158 13518755 ~ 13551129 (+) False XLOC_035498
TCONS_00069641 lncRNA downstream 106171 13518768 ~ 13555351 (+) True XLOC_035498
TCONS_00072160 lncRNA downstream 274507 13687104 ~ 13692006 (+) True XLOC_035499
TCONS_00069633 mRNA upstream 6764 13364950 ~ 13382351 (+) False XLOC_035495
TCONS_00069634 mRNA upstream 8774 13368150 ~ 13380341 (+) True XLOC_035495
TCONS_00069630 mRNA upstream 229528 13106760 ~ 13159587 (+) False XLOC_035494
TCONS_00069628 mRNA upstream 290923 13064750 ~ 13098192 (+) False XLOC_035493
TCONS_00069625 mRNA upstream 399978 12975963 ~ 12989137 (+) False XLOC_035492
TCONS_00069639 mRNA downstream 90780 13503377 ~ 13505486 (+) False XLOC_035497
TCONS_00069640 mRNA downstream 90894 13503491 ~ 13505486 (+) True XLOC_035497
TCONS_00069643 mRNA downstream 282353 13694950 ~ 13696012 (+) True XLOC_035500
TCONS_00069644 mRNA downstream 288008 13700605 ~ 13787309 (+) False XLOC_035501
TCONS_00069645 mRNA downstream 356917 13769514 ~ 13788311 (+) True XLOC_035501
TCONS_00069632 other upstream 235537 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069614 other upstream 1528971 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069612 other upstream 1673833 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069600 other upstream 2545047 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069587 other upstream 3495327 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069647 other downstream 476221 13888818 ~ 13944141 (+) False XLOC_035504
TCONS_00069654 other downstream 757306 14169903 ~ 14170572 (+) True XLOC_035508
TCONS_00069656 other downstream 1003101 14415698 ~ 14415823 (+) True XLOC_035511
TCONS_00069660 other downstream 1393577 14806174 ~ 14806290 (+) True XLOC_035515
TCONS_00069670 other downstream 1657103 15069700 ~ 15078299 (+) False XLOC_035519

Expression Profile

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