Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00069638 |
| length | 563 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_035496 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 13389115 ~ 13412597 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030098 | lymphocyte differentiation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0001779 | natural killer cell differentiation | biological_process |
| GO:0030217 | T cell differentiation | biological_process |
| GO:0030218 | erythrocyte differentiation | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0033077 | T cell differentiation in thymus | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004715 | non-membrane spanning protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ko04630 | JAK-STAT signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04217 | Necroptosis |
| ko04550 | Signaling pathways regulating pluripotency of stem cells |
| ko04658 | Th1 and Th2 cell differentiation |
| ko04659 | Th17 cell differentiation |
| ko04062 | Chemokine signaling pathway |
| ko05200 | Pathways in cancer |
| ko05203 | Viral carcinogenesis |
| ko05223 | Non-small cell lung cancer |
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko05161 | Hepatitis B |
| ko05162 | Measles |
| ko05169 | Epstein-Barr virus infection |
| ko05340 | Primary immunodeficiency |
| ko01001 | Protein kinases |
| id | description |
|---|---|
| ZDB-GENE-070725-4 | Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within T cell differentiation in thymus and natural killer cell differentiation. Predicted to be located in cytoskeleton and membrane. Is expressed in male organism and thymus. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia; acute megakaryocytic leukemia; adult T-cell leukemia; and juvenile myelomonocytic leukemia. Orthologous to human JAK3 (Janus kinase 3). |
| ensembl_id | ENSDART00000138151 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00069631 | lncRNA | upstream | 284054 | 13107023 ~ 13113529 (+) | False | XLOC_035494 |
| TCONS_00069629 | lncRNA | upstream | 299728 | 13093574 ~ 13097855 (+) | True | XLOC_035493 |
| TCONS_00072156 | lncRNA | upstream | 334445 | 13027760 ~ 13063138 (+) | False | XLOC_035489 |
| TCONS_00072157 | lncRNA | upstream | 334445 | 13040694 ~ 13063138 (+) | True | XLOC_035489 |
| TCONS_00072155 | lncRNA | upstream | 357007 | 13027524 ~ 13040576 (+) | False | XLOC_035489 |
| TCONS_00072158 | lncRNA | downstream | 119053 | 13518522 ~ 13597892 (+) | False | XLOC_035498 |
| TCONS_00069642 | lncRNA | downstream | 119124 | 13518593 ~ 13551129 (+) | False | XLOC_035498 |
| TCONS_00072159 | lncRNA | downstream | 119286 | 13518755 ~ 13551129 (+) | False | XLOC_035498 |
| TCONS_00069641 | lncRNA | downstream | 119299 | 13518768 ~ 13555351 (+) | True | XLOC_035498 |
| TCONS_00072160 | lncRNA | downstream | 287635 | 13687104 ~ 13692006 (+) | True | XLOC_035499 |
| TCONS_00069633 | mRNA | upstream | 15232 | 13364950 ~ 13382351 (+) | False | XLOC_035495 |
| TCONS_00069634 | mRNA | upstream | 17242 | 13368150 ~ 13380341 (+) | True | XLOC_035495 |
| TCONS_00069630 | mRNA | upstream | 237996 | 13106760 ~ 13159587 (+) | False | XLOC_035494 |
| TCONS_00069628 | mRNA | upstream | 299391 | 13064750 ~ 13098192 (+) | False | XLOC_035493 |
| TCONS_00069626 | mRNA | upstream | 408446 | 12975963 ~ 12989137 (+) | False | XLOC_035492 |
| TCONS_00069639 | mRNA | downstream | 103908 | 13503377 ~ 13505486 (+) | False | XLOC_035497 |
| TCONS_00069640 | mRNA | downstream | 104022 | 13503491 ~ 13505486 (+) | True | XLOC_035497 |
| TCONS_00069643 | mRNA | downstream | 295481 | 13694950 ~ 13696012 (+) | True | XLOC_035500 |
| TCONS_00069644 | mRNA | downstream | 301136 | 13700605 ~ 13787309 (+) | False | XLOC_035501 |
| TCONS_00069645 | mRNA | downstream | 370045 | 13769514 ~ 13788311 (+) | True | XLOC_035501 |
| TCONS_00069632 | other | upstream | 244005 | 13143165 ~ 13153578 (+) | True | XLOC_035494 |
| TCONS_00069614 | other | upstream | 1537439 | 11860028 ~ 11860144 (+) | True | XLOC_035486 |
| TCONS_00069612 | other | upstream | 1682301 | 11687257 ~ 11715282 (+) | False | XLOC_035484 |
| TCONS_00069600 | other | upstream | 2553515 | 10843952 ~ 10844068 (+) | True | XLOC_035474 |
| TCONS_00069587 | other | upstream | 3503795 | 9893672 ~ 9893788 (+) | True | XLOC_035461 |
| TCONS_00069647 | other | downstream | 489349 | 13888818 ~ 13944141 (+) | False | XLOC_035504 |
| TCONS_00069654 | other | downstream | 770434 | 14169903 ~ 14170572 (+) | True | XLOC_035508 |
| TCONS_00069656 | other | downstream | 1016229 | 14415698 ~ 14415823 (+) | True | XLOC_035511 |
| TCONS_00069660 | other | downstream | 1406705 | 14806174 ~ 14806290 (+) | True | XLOC_035515 |
| TCONS_00069670 | other | downstream | 1670231 | 15069700 ~ 15078299 (+) | False | XLOC_035519 |
