RNA id: TCONS_00069646


Basic Information

Item Value
RNA id TCONS_00069646
length 1667
RNA type mRNA
GC content 0.52
exon number 11
gene id XLOC_035504
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13849999 ~ 13955872 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCCTCATCTTTTTTTACGAACTCCCCATGTCTGTTCTCTATCTCCTCCGtcctccgtctctctctctctctcttttctcgcTTCGCTCTCTCATTGTTAAATCTCAGCAGCACTAAAAGAGTGACAGATCAGTGCACGCTCTGCGCAGAGAAATTCAGGAAAACGTCACAACcgaggaaagagagagagcgaggagagagagagagagagagagagagagagggagggagggagagggaCAGACAACGAGGGAGGATATATTGATACAAAACGACGgtggtttctcttcagtgtgtgtgagagagaccatGAGTGGAGACAAGATGGAGCGCTGGAACAGATGAAGACTGTCATTGGTTCTTTCAAGTGGTCCCAATGAGCGTCTCCAAACCACCTCCACCCCAGTCCCATTTCCCCCCCAACAACACCACCTCCCACCTCCCCCTTCCTCCGTCCTCCTCGTCCACCCCGTCGCCCTCCACGCCTCCGTCAGCGGCGGGACCCCCAAGCCCAGCAGtgcctcctcctccttctccagtCAAGATCTCCATGCAGGAGCACTTCGCCATCAATGTGTGTCCCGGGCCAATCCTCCCCATTCCACAGATTTCCGACTTCTTCCCTCGCTTCCACGACTTCCCCATCACGCCCCCTCCACCCCGGGAGAAGCAGGTCTTAAAGGACAAAGACAAGGACGGAGACAGAGATGGAGAGAAAGACCGCAAGAGGGAGAGAGAGCAAGAGGAGAATGGAGAGTTCGCCGACTCGGATGACGATGACACCTACCTGGGAACTTTGGAGTTCAACCTGCTATTTGACCAAGAAAATAACTGCTTGCACTGCACCATCCACAAGGCCAAGGGACTAAAGGCCATGGACTCCAATGGACTGGCTGATCCATATGTGAAACTCCACCTCCTGCCTGGAGCAAGCAAGGCAAATAAACTGCGCACTAAGACTTTAAAGAACACGCTGAATCCAGTGTGGAATGAGACACTCATCTACCACGGCATCACGGCTGCCGACATGACCACCAAAACCCTCAGgctgtgtgtgtgtgatatggaTCGCTTAGGACGGAATGAGTTCATAGGTGAAGTCAGGGTGGCTCTCAAGAAACTGAAGGAGGGAGAGAGCAAGAAATACAACATGGGGCTTGAGAGAAtcgcacagACCCGGGAGGGGAACAGCCAGGCAATGGATCCTGCGGCTCCTGTTGCAGAGGAGGAGCGTGGCCGAATCCTGGTCTCTCTGCTGTACAACACCGAGAAGAACACACTGGTTGTAGGAATTATTCGCTGTGCTCACCTGGCAGCCATGGATTCAAATGGCTACTCGGACCCCTTTGTCAAAATTATTTTGCAGCCTGACATGGGAAAGAAGtccaaatataaaaccacagTGAAGAAGAAGACTCTAAACCCGGAGTTTAACGAGGAGTTTTCCTATGATGTCCCACATGATCAGCTCGCCAAGAAAACCCTGGAGATCTCAGTCTGGGATTATGATCTGGGCATGAGCAATGACTTCATAGGTGGAGTTGAATTGGGGATTAACGCCAAAGGAGACAGACTGAAACACTGGTTCGAGTGTCTAAAATACAAGGGAAAGAAAGTGGAATACTGGCACACACTGACACAGCAAGGAGCCCCAAGCAGTGACtaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-451 Predicted to enable metal ion binding activity. Predicted to be located in membrane.

Ensembl:

ensembl_id ENSDART00000143784

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072162 lncRNA upstream 50630 13794981 ~ 13799369 (+) True XLOC_035503
TCONS_00072161 lncRNA upstream 89084 13756013 ~ 13760915 (+) True XLOC_035502
TCONS_00072160 lncRNA upstream 157993 13687104 ~ 13692006 (+) True XLOC_035499
TCONS_00069641 lncRNA upstream 294648 13518768 ~ 13555351 (+) True XLOC_035498
TCONS_00069642 lncRNA upstream 298870 13518593 ~ 13551129 (+) False XLOC_035498
TCONS_00069649 lncRNA downstream 15545 13971417 ~ 13980643 (+) False XLOC_035505
TCONS_00069650 lncRNA downstream 15545 13971417 ~ 13991941 (+) False XLOC_035505
TCONS_00069651 lncRNA downstream 15545 13971417 ~ 14020139 (+) True XLOC_035505
TCONS_00072163 lncRNA downstream 46205 14002077 ~ 14006807 (+) True XLOC_035506
TCONS_00072164 lncRNA downstream 285713 14241585 ~ 14246353 (+) True XLOC_035509
TCONS_00069645 mRNA upstream 61688 13769514 ~ 13788311 (+) True XLOC_035501
TCONS_00069644 mRNA upstream 62690 13700605 ~ 13787309 (+) False XLOC_035501
TCONS_00069643 mRNA upstream 153987 13694950 ~ 13696012 (+) True XLOC_035500
TCONS_00069639 mRNA upstream 344513 13503377 ~ 13505486 (+) False XLOC_035497
TCONS_00069640 mRNA upstream 344513 13503491 ~ 13505486 (+) True XLOC_035497
TCONS_00069652 mRNA downstream 102774 14058646 ~ 14060244 (+) True XLOC_035507
TCONS_00069653 mRNA downstream 202149 14158021 ~ 14170576 (+) False XLOC_035508
TCONS_00069655 mRNA downstream 425400 14381272 ~ 14441812 (+) True XLOC_035510
TCONS_00069657 mRNA downstream 754670 14710542 ~ 14782287 (+) False XLOC_035514
TCONS_00069658 mRNA downstream 822420 14778292 ~ 14828450 (+) False XLOC_035514
TCONS_00069632 other upstream 696421 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069614 other upstream 1989855 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069612 other upstream 2134717 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069600 other upstream 3005931 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069587 other upstream 3956211 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069654 other downstream 214031 14169903 ~ 14170572 (+) True XLOC_035508
TCONS_00069656 other downstream 459826 14415698 ~ 14415823 (+) True XLOC_035511
TCONS_00069660 other downstream 850302 14806174 ~ 14806290 (+) True XLOC_035515
TCONS_00069670 other downstream 1113828 15069700 ~ 15078299 (+) False XLOC_035519
TCONS_00069671 other downstream 1122248 15078120 ~ 15080573 (+) True XLOC_035519

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_06180084_06216445.mRNA True 1047 mRNA 0.52 9 CI01000010 6180084 ~ 6216445 (-)