RNA id: XM_039822978.1


Basic Information

Item Value
RNA id XM_039822978.1
length 3154
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC120573316
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5319797 ~ 5335717 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAAACAGTGCTCGAGCCACAGCCAGCTGTACACAGGTCATTGAGAAGCTAAATAGATACAGCGATATTACAGGGTAGTAGACACAGAGCCATAAGCCTTAAACAACACGGTGTGTGACAGTGGACACGGCAGGCTTTAGCAGTCCCTTCATCACTGTCTTCCATTGGAACAGTCTGCTGTGTAACGTTAACTTACTGTACGTGCTGCAGgcatctctcctcgATCCGCTAGCTTCCTGCCCCCTGAATCCACTGTGAAGAAGCCCGGTCTCAGGAGACAACACagAAAGAGCAAAGTGCCTTATTTCCCTGCTCGGTGAACCCCTTTAATCTGAACACAAGACGATGGCTGATAAAGTGGCTGACTTTCCCAGTGGCCCGCTGGATATCTACAGGAACAAAGCCTCTTTCAACTGGAAGGACATGCTCTGCTTCTTAGACGGAGAGGAAATCATTGCATTCAAGCAACAAGTGTTCAAGGCACTTGAGAATGACCCTCTGTTTGCACGTCGGCCCGGCGAAGACGTCCCTCTCGAGAAAATGAGAGAGTTGACCTTCCTCAGGGCAAAGCAGCTCTTCTGCTATGACTTCCTGACAAAAGAAGAGGTGATGGCTAACCCCTGGAAGTCTATAACGCTCAGTGATTGCCTGGGCATGTACGACTGGGCCTTGGGGGCCAAGTACTTTCTCAACAAAGGGCTGTTTGGACCAACAATTGCCAACTCCGGATCAGCGAGACACAGCAAATACGTTGAAAACACTGAAGACATGACGaCGTTTGGATGCTTTGGACTGACTGAGCTGAGCCACGGCAGCAACACCAGAGCCCTGAGGACCACAGCAACATATGACCCCTCCACCCAGGAGTTTGTGATCAACTCTCCGGACTTTGAGGCCGCCAAGTTCTGGGTGGGGAACATGGGTAAGACTGCGACCCACGCTGTGGTGTTCGCTCAGCTCTACACGCCTGACCAGGTGTGCCACGGCCTGCACTCCTTCGTTGTGGCGTTGAGAGATCCCAAGACCCTGCTAGCTCTGCCTGGTGTGCTGGTTGGAGACATGGGCAAGAAGCTGGGGCAGAATGGACTGGATAACGGGTTTGCTTTGTTTCATAATGTGAGGATCCCTCGGGAGAATCTGCTGAATAAGACGGGAGATGTTACTCCTGATGGCCGCTACGTTACACCATTTAAGGACCCCAACAAGCGTTTCGGGGAGTCTCTGGGTGCCCTGTCAGGTGGCAGGGTGTCCATCACCAGGATGGCTTTGGTCAACCTGAAGCTTGCTCTGACTATCACCATCCGCTTCTCAGCCACCAGGAGACAGTTTGGACccaaaaacacagaggagaTTCCTGTTTTGGAGTACCAGTTACAGcAATGGCGTCTGATTCCGTACCTGGCAGCAGCGTATGCTCTTGAACACTTCTCCAAATCCATCTTCATGAACTTTGTTGAGTTCCAGATTGGACAGATGATGAGGGagaagagtgacagacaaGCAGAGATGGGCAGGGAGATCCATGCTATAGGCTGCTCCAGTAAACCACTGGGCTCATGGATTGCTCAGAGAGGGATTCAGGAGTGTAGGGAGGCCTGCGGTGGACATGGATACCTGGCCAtgAACCGGCTGGGTGATCTGCGTAATGACAATGACCCAAACTGCACATATGAAGGAGACAACAACGTCTTGCTGCAACAGACCGGCAACTACCTGCTCAGCTGGCTCCATGCTAAACACCGAGATGGTGTGCGCATTGAGTCTCCTCTTCACACTGTGGATTTCCTGGATGATTCCCACAAGATCCTAGAAAGCAGGTTCACAGCAAGAATGATGGAGGAGTGTATGGACTCTGCAGTGCCACTGGCAGCCTATAAGTGGCTGGTGTGTTTCCTGCTGGAAGAGAGCCAGAAGAGGCTGGAGCAGGAGATGGCCTCGGGAAAGGAGGAGTTCGAGGCCCGTAACAACAGCCAGgtctACTACTGTCGCTCCCTGGCCATGGCCTACATAGAACACAACTGTCTCCAGAGGTTTCATGAGCTGACTACTGATACGGACACACCAGCTGGTCTCAGACCTGTACTCAGCAAGCTGTGTGCCCTGTATGGGCTGTGGAGCCTCAGCAACCACATGGCCACACTCTACCAGGGTAATTACTTGAGTGGAAGGAAGCCCACAGACTTGGTCCAGATGGCCATTCTCACTCTCTGCTCCCAGCTGAAGGATGATGCAGTAGCATTGGTGGATGTTTTGGCACCTACTGATTTCATTCTCAACTCACCTATTGGCAATGCTGATGGACAGCTTTACAAGAACCTGTGGTCGACAGTGATGCAGGGCAGCCAGGTGCTGGAACGGCCTTCCTGGTGGAAAGAGTTCTGCTCAGACAAGCCGGTGGTCGGATCCCTCCGTCCAAAACTCTAGAACCCACTCAACAACCTCACTTTACCACATTCTAACTAAGTGCAATTTAGAATATAATGTCCATACACACAACCTATTGCCAAAAAAGTGTCCAAAATCTTATAAGTGTTTATTATGAAACGCTGGAGTCCTGTGCACTCTTAAGAACTCTGGATGAGCTAAAGAACTCTTGATTCAAAATCAAAAAGACCTCAAAACAGTTACACTGATAGATACAATTATCACAATCCCTTCATAAACACACATAGAAGCCTTGGACCTGCTCACCAGCACATTCTCTAAAACCCTGCATTTAAATGTCGTGGCCACCACATCAGATAGGATTGTAAACAGGACCTGCCAACGCTGCCCAGCTGAAATGAAATTGCAGATTTTTCTGCTACAGCATACTGATCTTTTTTGTGAATTACGTGTCAAGTCCTCAGAATGGTGTAAATCTTCTGtctccaaaaacaaagacattcTGGGCCAATCAAATCATTCCACTTTAAACTGTatcaacaaaaagaagaaatgagACTGTCCTGTCATTGGCTGACAGTGGTGCTTACCGGCACAGAGCAGATGTGACCCAACACAGGAACTCACTAATACACAACTCTTACTAATTTctcttaaagctgctgtaggtaagattgtgaagagccaggactttgctaacaaatttgaacatcgacaacttctcagtccctcccccctttctgctgcagcccaaaccgtctcctaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190523 lncRNA downstream 111337 5208237 ~ 5208460 (-) True G141259
TU190491 lncRNA downstream 241581 5077628 ~ 5078216 (-) True G141233
TU190482 lncRNA downstream 283600 5035502 ~ 5036197 (-) True G141224
TU190480 lncRNA downstream 296712 5022593 ~ 5023085 (-) True G141222
TU190466 lncRNA downstream 371818 4945419 ~ 4947979 (-) False G141214
TU190665 lncRNA upstream 116581 5452292 ~ 5475138 (-) False nat16
TU190676 lncRNA upstream 224320 5560031 ~ 5564384 (-) False cd99l2
TU190699 lncRNA upstream 248451 5584162 ~ 5584526 (-) True G141394
TU190724 lncRNA upstream 375723 5711434 ~ 5711716 (-) True G141416
TU190757 lncRNA upstream 442072 5777783 ~ 5829468 (-) False G141439
XM_039822974.1 mRNA downstream 74840 5213138 ~ 5244957 (-) True LOC120573313
XM_039822976.1 mRNA downstream 200470 5114994 ~ 5119327 (-) True znf16l
XM_039823408.1 mRNA downstream 235406 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA downstream 235406 5038118 ~ 5084391 (-) True sstr1b
XM_039821490.1 mRNA downstream 504662 4793478 ~ 4815135 (-) False peli3
XM_039821607.1 mRNA upstream 82762 5418473 ~ 5423102 (-) False LOC120572332
XM_039821606.1 mRNA upstream 82762 5418473 ~ 5421625 (-) True LOC120572332
XM_039821609.1 mRNA upstream 88850 5424561 ~ 5475155 (-) False nat16
XM_039821608.1 mRNA upstream 88850 5424561 ~ 5475155 (-) True nat16
XM_039823376.1 mRNA upstream 224315 5560026 ~ 5582995 (-) True cd99l2
TU190492 other downstream 219715 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 359792 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 655599 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 658686 4660621 ~ 4661111 (-) True G141159
TU190197 other downstream 1044523 4274651 ~ 4275274 (-) False G141027
TU190708 other upstream 261247 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 407848 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 407848 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 407848 5743559 ~ 5782623 (-) False G141439
TU190756 other upstream 442072 5777783 ~ 5843146 (-) True G141439

Expression Profile