RNA id: XM_039823011.1


Basic Information

Item Value
RNA id XM_039823011.1
length 4278
RNA type mRNA
GC content 0.48
exon number 12
gene id trappc14
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6158858 ~ 6185624 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctcctctgcagcgctgtggaggagggtctggcaatgggagactaGTAGTTCATTAACCGAAGATGACAGGAATTGCTGCTCTGGTGTTGGACGACCAGGTTGTCTTCTGTCTCACCGTCTCGTTGGACAAGCTGCCAGTCAACACGCTTACAGCCAAGATCGTAGTGACCGTGTGGAGGCCGGAGGATGAGAAGGCGGAGGTGAGGGAACATGGCTACCTGACTCTCCTGCAGCTCCGGAGTCCAATACACACCTTCAGGCAGGACCTCAACACCTTCAAGGCACAGGTCAGCACCACCGTGCATGTTCTCCCACCACCCAGTGTCCAGTTTCAGCACATGGCTGTCTCTGGAAAACACCTGACCGTCCTTAAAGTGTTGAACTGCAGCTCTCAGGATGAGGTGTGTGTCAGAGATGTGAAGATCCTTCCTAACTATAACCTGTCCTACCTCCCCATGATGCCAGATGGTTCAGTTCTCATAGTCGACAACGTCTGCCACCAATCAGCTGAGGTCACAGTGGCTTCATTCTATCGGATGGACAGCGAGTCGTCGCGTTTACCCAGCATGCTCAGCGCCCTGGAGGAGCAGAACTTCCTGTTCCAGCTGCAGCTACAGGACACAGCAGAGGAGGACTCCAGTGAGGGTTTGGAAGTCCCGTTGGTGGCTGTGTTACAGTGGTACACTCCGACACTGCCTCTAACAAGATACATCTCTAGTTGTTACGCGCTGCCCAGTATCCGCTTGGATCGTCCTCGGCTGGTGATGACAGCTTCCTGTCCTCGTGCCGTCAGGCCTCTGGAGCACTTCTGGGTAAAATACACCCTGCTCAACAACTTGCAGGACTTCCTGGCCGTCCGTCTGATCTGGAACCCTGACGctGATAGAGGAGGCCAGCAGGATCCCAGGGCCCACCCGGCAGTGGTGTGCCAGTCCCCTCTCAACAACCTGGGCCAGTGTAGGAAGGGCTCCACCCTCTCCTTCACCGTGGCCTTCCAGATCCTCAGGACTGGACTCTTTGAGTTGAGCCAGCACATGAAGCTGAAGCTGCAGTTCACAGCCTCGGTGTCCACCCCCACCGCGGAGGTCGGATCCCCGCTGAGGAACTGTCCATCGTCAGTCAGAGAGCTGCTGGACAGACAGAGCCTGGGCCGCTCTCAGAGCTTCTCCCACCAGCTGCCGCCCAGGGCTCACCACGTCAGGTCCGGCAGCGCCATGGAGCATCGGAGCATCACTCCTCCTGCAGGATCTCCAGCGGGCAGAGGCCGGTACCTGCCACCCAGCCACAGCCTCATCTCACTGGACAAAATAGCCAAGAGAGAGTGTAAGGTGTTGGTGCTGGAGCCGGTCCAAGAGGCACACAGCCGATGACCTGGAGAGACCCATACATCAGTGTTTGGTCCCTCTGTCCAGCCGCCAGAGCATCCACCCTGTGCCCTGAAGGCAACACGGCGTGGACGCAGTGATGGAAGGAGGAGCAGAGGAGCGCTGATTggccagagaggaggaggaggtgatgagaggacagagagaggaaggtgaTGGAGGGATAATACTGCTGGCCTGACatgatgaaagaaaagaaaagccccCCCCCGCAGAGCCACAAGAATTGTTCATTTCATTGGTTCATCatttcaattttgttttggtttttactTTTCCATCAAGCCTTCGTTCCATTTTCCTCCACGGGTTATTTCCCTTGCCTTCCTATTCCTGTGTATTTATAGTTACAAGATTCTTTTGGAACTTGGCGTTGACTGTATTTTCCTTTCTTATGGCAGCTCTTGTTTTCTTGTAGGATATAAATCAGGAAACCCCAGACTAACTGCGTGCGTCAGGGCTGGGAGCACGGAATAAGCTGGATGGATCCAGTAGCTGGTATTTATTTTGATAAAGTAGCAGTccaacattttgtgaaataattTGTTCGCCATCGAGATACGATAACGTTATCTGTCTAAGAACGTTAGATAACGGGAAAAACTGCTGGCCTAGCTGCATCTGATAGACCTTGCAACAGTCCTATTTCCACCTTGTGCACTATATGGCCCTTTCCTGGTCCAACCGTAGACTGACGAGACATGTCTCCACTTCCTTCGCACTGTACAAAATTGAAGCCAAAATCTCCCAGATACAGGCAGCctcatcttgtaattttggagtcTGCGCAGTACTGATCAGGCGGTACAGCTGCGATATCAAAGTCCCACCCATACACCCGCCCGACCAATCCCGAGTCAATCCCAGCTGTCAATCCTGACATTTCACCCCGTTATTATAGCATCAAAgaactaataaaaaccaaacttctcagtatgtgaacaaaaatctgcATGATAACAACTACCTGAATGACTGAAAACCGTCTTTgggaaacatttatttgacatgtacttttgactttttagtTTGGCCTATGTCCTGTCCGCTAACatggagggggcggggcttatgacctacactgcagccagccaccagggggcgagCCAGACGTTATGGCCTCACTTACACAGTCTATTAaagctgcaacgattagtcgactaatcgattagtcattTGATACGAAAATAggtggcaactattttgataataataagtcattttttcagcCTCTCAAATGTGGAGATTTCCAGcctcttttctgttttactcAATATCCGGGTTTTGgactgacaaaacaagacacttAGAGATATCTGCTTGCGATGGGCAATTTTCACCATTTTTCTGAAACTTTATAGACAaaacgattaatcgagaaaaagAATCATCAGAATTAATtatttgataatgaaaataagcgttagttgcagccctacagtcTATGCATCGACCCCTGGTTGACaatgccccccccctcccatcgGTGGAAAGCCTGAAACCAGAAGAGTGGACGCACTTATAGCAGCCCATTAAGCCCCATGGTGTCAGATGTTCCACTGTCCACATATTGTTGGCCACACAGTGTAGCTCGTTAGCAAGTAGGCTAGTCCCCAAAGTCAGCTGGGTTCCGGTCACTTAgaaaaaccctaaccctaagagAACGGGAGCCACTGTTGGGTTAGGCTTAGGGCCAACATGTAGTTCTAGTGTTAGGGCCAACATGTAGTTCCAACAACTGCTACAGCGGTGCACTACACAAGATACAACATGTCAATCAGACAGCTGTGGGCTCCATACAGAGGGGATTTGGCGCTCTCTTGAcaaagctaggctagcagttcCCCcactgcttccagtctttgtgctaagctaaacgtGTTCTGAAACTACTCGTGCTGTAAACGTGATTCCGGGTATGACCGAAAATAGGGAAGTTCACTTCCCACAATATCAGACCGCGCCCTTTAAATAAGCTCAGGCAGAAGTTGCCATCTGGGAGGTTTGAACTACAATCTCTTTATTCTACCCGCTTAGGTTTCGTCTTCAGTATCGGAAACATTTAGGGGAAATTAATCAGTAATTACAAGTAATATTGATAGGTTTAAGGTtacaaattgtgtttttttttattattataactgaaCTACAGAACTGGATGACAGCTGCGTGTTGTCCTACACCTTCCCTAGCAGGAAGTGGTTTGCACTCAGACTGACATCTATCGGTCTATTTGTAGAATTTGAGTATTGAGTGTGATCCAGGACCAGCTCCATACAgtagtctttacactggctgatttatttaaatgtatttgtcttAATGATCCCTTCATTTATTGGCAatgtttttgtctattttttggACCTGTTACATAGACTCCGTGGTGTGACAGTGGACCAGCACCTTTTACAGTGTGGTCCCCTTATTTCATTCATTGTCCAGTAATTCAAAACCCCCTAGCAACGTAACGCATGTTACATAATCGCTGCCAATGACTCCCGTGTAGAATGGGTGAGCCTCATGTGGAAACAGGGTCCAGTTGAAATGAGAGGCTTGTTGGCGTTGTTGAACAATTAATGCTTCTAATGTAGTCTGATAATTACAGAACTCATTTCTTAGGGCGTTTCCCAGAAAGAACTGTGTCATTTCTATTTTCCAGGGGTGCTCTTAAGCAGGGTGCTTTtaaaccaggggtgtcaaactcaaaggGGCCACACATGTACAGTTCATTGACATGCTTTGATTTAactgaaaaagtcaaatatctttgactgtactATTGCCCGTGTCATATAATCTTCTCACGTACAATTTGGTCGACATAAATCCCTCAgcaaagtcagcaaaaaaaaaaaaattactttataGCCATCCCAGAATTTAGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190999 lncRNA downstream 1445 6156052 ~ 6157413 (-) True G141601
TU190837 lncRNA downstream 166631 5989895 ~ 5992227 (-) True G141470
TU190834 lncRNA downstream 187471 5970935 ~ 5971387 (-) True G141468
TU190833 lncRNA downstream 188245 5969951 ~ 5970613 (-) True G141467
TU190758 lncRNA downstream 329390 5777783 ~ 5829468 (-) False G141439
TU191007 lncRNA upstream 21099 6199308 ~ 6205730 (-) False gal3st4
TU191019 lncRNA upstream 87231 6265440 ~ 6266025 (-) True G141612
TU191020 lncRNA upstream 87942 6266151 ~ 6266583 (-) True G141613
TU191040 lncRNA upstream 130689 6308898 ~ 6309895 (-) False sox19b
TU191049 lncRNA upstream 197789 6375998 ~ 6378372 (-) False tbc1d14
XM_039823454.1 mRNA downstream 153640 5998118 ~ 6005218 (-) True serpine1
XM_039823409.1 mRNA downstream 191430 5959440 ~ 5967428 (-) True vgf
XM_039823468.1 mRNA downstream 203798 5946032 ~ 5955060 (-) True snapc2
XM_039823452.1 mRNA downstream 236987 5901924 ~ 5921871 (-) False LOC120573619
XM_039823018.1 mRNA upstream 8102 6186311 ~ 6220260 (-) False gal3st4
XM_039823017.1 mRNA upstream 8102 6186311 ~ 6220260 (-) False gal3st4
XM_039823016.1 mRNA upstream 8102 6186311 ~ 6220258 (-) False gal3st4
XM_039823015.1 mRNA upstream 8102 6186311 ~ 6205786 (-) True gal3st4
XM_039823012.1 mRNA upstream 8102 6186311 ~ 6205783 (-) False gal3st4
unassigned_transcript_683 other downstream 129936 6028841 ~ 6028922 (-) True trnas-uga_22
unassigned_transcript_681 other downstream 201726 5957051 ~ 5957132 (-) True trnal-aag_6
TU190760 other downstream 315712 5743559 ~ 5843146 (-) False G141439
XR_005641400.1 other upstream 43762 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other upstream 43762 6221971 ~ 6226806 (-) False LOC120572220
XR_005641774.1 other upstream 157285 6335494 ~ 6335632 (-) True LOC120573734
XR_005641775.1 other upstream 158412 6336621 ~ 6336759 (-) True LOC120573735
TU191048 other upstream 175255 6353464 ~ 6371093 (-) True LOC120572256

Expression Profile