RNA id: XM_039823073.1


Basic Information

Item Value
RNA id XM_039823073.1
length 3622
RNA type mRNA
GC content 0.49
exon number 31
gene id map4k2
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4381783 ~ 4433883 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGGACTATCTGCACACAGACGCCTGGAGTGTGTCAGCGTATACGGActggagttgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtctgccggCTGGATCGATACACCAGCAATTAGTCAGCTCCAATTAGTTCCTATTAAACCAGTCAGCCAGCCAGTCCGAGTGTGTTCATCTGCTGCTGCTTTCTCCCCGGACAACAGCAGCTGGGATGTGTGAGTAGGAAGCCCGCCAGGCTCACCCACAGCACCCAGAGGTGTCTCCAAACATGGACAGGGTAGGGGTGTCATTCCTGGACCCTTTGGATGATTACGAGTTAATACACCGGATTGGGTGCGGCACCTATGGAGATGTGTTCAAGGCTCGAAAGATCAGGACGTCTGAACTGGCAGCTATCAAGATTGTCAAGCTAGACCCTGgTGATGACATCACGTCCATCCAGCAGGAGATCACCATGATGTCGGAGTGCAAGCACAAAAACATCGTGGCCTACTTCGGCAGCTACCACAgGAACACCAAGCTGTGGATCTGCATGGAGTACTGTGGTGGAGGCTCACTTCAGGATATTTACCACgTGACGGGCCCATTAAAGGAGAAACAGATAGCGTACGTGTGCAGAGAAACCCTCCAGGGTTTGTATCACCTGCACGAAACTGGCAAAATGCACAGAGACATAAAGGGAGCCAACATCcttttgacagagagaggagatgtGAAACTGGCTGATTTTGGAGTTGCAGCAGAGATCAGTGCCTCTGTGGCCAAAAGGAAGTCTTTTATAGGAACTCCCTACTGgATGGCTCCAGAGGTGGCTGCAGTTGAGAAGAAGGGTGGGTACAACCATCTGTGTGATATCTGGGCCGTTGGTATCACCGCCATCGAGCTGGCTGAGCTCCAACCGCCCATGTTTGACCTCCACCCAATGAGAGCGCTGATGTTGATGTCCAAGAGCAGCTTCCAGCCTCCAAGGCTAAAGGATAAAACCAAATGGTCAGCAGGTTTCCAGAGCTTTGTGAAGATGTCTCTCATTAAAAACCCTCGTAAAAGGCCCTCAGCTGAGACACTGCTGCAGCATCCATTTGTGACGCAGCTCCTGACCCGGAACCTGGTCATTGAACTTCTGGACATGGCCAACAACCCTGAGCtccacaacacgcacacacacagtatggaCGACAACGAGCTGGAGATTGGGGAAGTGGCTCCAGACAAGATTCAGTCAGCAGGGAAACACCTGCCTGCAGAGAGGACCCTGTCTGAAGAACAatTCGACCAAATGAAGTTTGGGCCTCCACTGAGGAAAGTCACTGAGCCGTATCCTGATTTGGGCTCTTATGACGACAACTGGAGTCTGTCTGGAGATGAAGACAACTCGCCGAGTTTAACCATCAGGAGGGCGCCATCTACTGATGGAGGTAGGAAGAGTGGCTTGTTCAGTCCGGCTACAGCCTCCCTGCCAGCCTTCAGCTCTTTAACTCCCAGCACGGAGGACAGTGAGCTGACGGTGAGACCCAGCTGCACACTGGGCCCAGACCCTGTCCTCACTGCGGACTCCACCTCCACTACAGTTTTGGCCAGGTGCTCAGCCACACAGGACATCAGACAGCGCTGCAGTGATCCATGTCTGCCTGTGGAGGACGCTGCaacagcagagaagaagaaggtcGCCACTGTTTCCTCTTCGAAAAGAGAGACACCGCTATCACCTGAATGGAGCACACTGAGGAAAAAGACTGAGGACGCTAGGGCTGATTGTCATGGACTTCCTCCTACCCCTCAAGTCCATATGGGAgcctgcttctccaaagtcTTCAACGGTTGTCCTCTTAAAATCCACTGTGCTGTCACATGGGTTTTACCCAAGACAAGAGATCAGTACCTTATTCTTGGGGCAGAGGAGGGCATCTACACACTGAACCTTAATGAACTTCATGAAGATACACTAGAGAAGCTGCTCCCTCAGCGATGCACCTGGCTGTATGTAATGAACAACGTGCTGATGTCTGTATCAGGCAAGTCTTCCCAGCTTTATTCCCACAGTCTGTCGGCTCTGTTTGAACAGAGAGGACCGCTGCAGAAGAAACACAGCAGTCTGTCACTCAGCACCAGCCGCTTCACTGAGAGGATCAGCTCCAGAAAGTTTGCCATATCTGTGAAGATCCCCGACACTAAAGGCTGCAGGAGATGTAGTGTAGCAAGAAACCCATATACGGACAGTACATTTCTATGTGGGGCAGTTCCATCTGGCCTGGCTCTTCTCCTGTGGTATGAGCCTCTTCAGAAGTTCATGCATCTAAAGCACATAGCCATGAGGCTACCTGACTCtctgcccatatttgagctgCTGGTGTTGGTGTCGGATGAGTTCCCCCAGCTGTGTGTCGGGGTGAGAGACAGTAGTAACGGGAAGCGCCCAGTCAGCCAGCAGCTCAAGTTTGATATCATAGAGCTGAACAGCACGCCTGTCTCAGCGCCAGATAGTGGAGCACTCAGGGCAGTACAGGTAACCCAAATGGACAGAGACACTGTTCTCATCGCATTAGAAAAAACGGTTAAGATAGTGAACCTCCGAGGGCTTCCATCCAAAGAGCTGGCTGCTGAAATGGTCTTTGACTTCCCCATTGAAACTCTAGTCTGCTTACAGGACAGTGTGCTGGCTTTCTGGAAGCATGGCCTTAAAGGGAAGAGTTTTCATTCAAATGAGGTGACACAAGAAATTACAGATGAGAGTCGAGCATTCAGAGTTTTGGGAACAAACAGGGACATCATCCTTCAGAGCACACCGACAGATGACCCCTCAGCACTGAGCAACCTGTACATCCTGACTGGACATGAAAGCAGCTACTGAGAGAAAATGGCTCAACTTCTTCAAAACGCACACTGAAGAGAAATGCAGATCTGTTCTATAACCCAGTGATGGAAACGGTGTCCTCCTTGCGAAGCTGTAGCAGACACCAGCACCAACTCTCTGCTGTGAGTGACGGATGTCAGCATGGAATTCAGTTGCCCATCCAGACTCAGACTTAAGTTGTTGGGCAACACATGTACAGGAGAGACTTGTCAACATGCTAAGTGAGTTTCTAACTCTTGTGTTTTcatgtaaaaacaattcatcTTGCCATCTTAAATCACAGTGTGACTGCAGCAGTGAAGACAGTTCCAGTCCTGATGCTTCAGCTCTACTGCTGTCAGTatggaccatagactgtaataaaaaaacaaaacatggacATAACATTTGTAATAGCACACATACATTTCTGAACTGATGTTCTGAAGCTTGTATTTGTTTACTGCTTGCTGTCGTCTTTGTCAGTTACTGGAACCAGAACATTTAGTCAGGGACGAGCAAGTTGCAAACACCACAGCTGAATGTGATAGGCTGAGACTCCTGTAAGTCATACACATGAATAAACCTTAACAATCTGTTAAAGGAATTGTCATAAATTACACAAAGATGCACTCTAAAGGAAGGGAAAGAATTTTAGGTCTTGTTTCCATtggttaaagtgctcatattatgctttttccctttcatttattgtgctatatatcttttttgtgcatgtaataggtttacaaagtgaaaaagtccaaagtccccccaaagggacttaccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190303 lncRNA downstream 49764 4331154 ~ 4332019 (-) False LOC120573533
TU190220 lncRNA downstream 62141 4318901 ~ 4319642 (-) True G141042
TU190219 lncRNA downstream 66239 4314178 ~ 4315544 (-) True G141041
TU190195 lncRNA downstream 106509 4274651 ~ 4275274 (-) False G141027
TU190317 lncRNA upstream 44547 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 44547 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 49855 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 52020 4485903 ~ 4486466 (-) True G141115
TU190332 lncRNA upstream 55417 4489300 ~ 4489504 (-) True G141117
XM_039821584.1 mRNA downstream 2269 4374190 ~ 4379514 (-) True LOC120572314
XM_039821585.1 mRNA downstream 2291 4374190 ~ 4379492 (-) False LOC120572314
XM_039821583.1 mRNA downstream 8110 4369182 ~ 4373673 (-) True rbm4.1
XM_039821577.1 mRNA downstream 13575 4353601 ~ 4368208 (-) False sf1
XM_039821431.1 mRNA upstream 1722 4435605 ~ 4444902 (-) True men1
XM_039821430.1 mRNA upstream 2487 4436370 ~ 4447350 (-) False men1
XM_039821429.1 mRNA upstream 2487 4436370 ~ 4447327 (-) False men1
XM_039822102.1 mRNA upstream 52687 4486570 ~ 4498207 (-) True si:dkey-106g10.7
XM_039822103.1 mRNA upstream 52687 4486570 ~ 4498206 (-) False si:dkey-106g10.7
TU190189 other downstream 106509 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 106509 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 106509 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 106509 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 226236 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 207612 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 226738 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 524796 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 665822 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1163075 5596958 ~ 5600462 (-) True G141400

Expression Profile