RNA id: XM_039823089.1


Basic Information

Item Value
RNA id XM_039823089.1
length 4154
RNA type mRNA
GC content 0.54
exon number 15
gene id kirrel1a
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7797279 ~ 7835028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGTGTAGAGTAGAAAACGGACTGGAGAgcgaaggagaggagagaggtgaaagaaaaaaaaaaagcagtgaaaTGGTGTAAAAGCTGAGCAAGTCCAAGCCGAGTCAGGGGACAAACGAGGAGGGACAGACGCAGGAGGATTATTGCTCTTTTGTGTAATTATTAATAAAGTCAGTAAACTCCCGCTTTTTGATGCTTTCCTCACGGAGGTTTGAGCCAATAACGGACTTATTGGTCGGCTGAACCATGCAGAGgctgctgctcctgagtttggCGTTGAGTTTTCAAACTGTGTGGACAGCGAGGTTCTCTCAGGAGCCGGCAGACCAGTCGGTGGTGCGGGGCCAGAGGGTGATCTTGTCCTGTGTTGTCTTCAACTACTCAGGCATTGTTCAGTGGACCAAAGATGGCTTGGCTCTGGGCATCGGCGAGGACCTCCAGGCCTGGCCCAGGTACCGCGTGCTGCGTGTGCAGGAGTTGGGCCAGTACAACCTGGAGATCCTGTCCGCCGATCTGTCTGATGACTCCCTGTACGAGTGCCAGGCCCCTGACGCCGCCCTGAGGTCCAGGAGGGCCAAACTCACCGTCCTCATCCCCCCAGACAACCCGGTGATCGATGGGGGTCCGGAGGTGCTGCTGAACGCGGGGGAGTCCTACAACCTGAGCTGTGTGTCTCGGGGGGCCAAACCGCCTTCTGTGATCGAGTGGCTTAAAGATGGTCTGCCTGTGGAGGGGGCTGCCAGTACCACTGAGGTGCTCGCAGACAGGAAGAGGGTGACCACGCGGAGCTACCTGCCCATCCAGCCCGTCGACACCGACACAGGGAGGAACTACAGCTGTGTGGCCACCAACCTGGCTGTTCCCACCGGCAAAAGCACAACTGTCTCCCTCAACGTACACCatTCACCGACAGTGACCTTGTCCATTGAGCCTCGCTCTGTCCTGGAGGGGGACAGGGTCACTTTCACCTGCCAGGCCCACGCCAACCCTCCTATTATGGGCTACAGTTGGGCTAAGGGTGGCGTGGTGCTGCAGGGTGCCAGGGAGAGTGTGTTCACCACCAAGGCCGACCACTCCTTCTTCACCGAGCCTGTCTCCTGTCTGGTTTTCAACGCCGTGGGAAAGACCAACGTCAGCATCCTGGTGGACGTTCACTTCGGTCCCATTCTGTTGGTGGAGCCGCAGCCAAAGACGGTAGACGTCGACTCTGATGTCACGCTCAACTGCAAATGGGCCGGAAACCCTCCGCTCACACTCACCTGGTTCAAAAAGGGTTCAAACATGGTTCTGAGCAACAGCAACCAGCTGTATCTGAAGTCGGTGAGCCAAGCAGATGCTGGACAGTATGTATGTAAAGCCATCGTCCCACGGATTGGAGTAGGAGAGACTGAGGTCACGCTCACTGTCAACGGTCCCCCCATCATCTCCAGTGAGCCAGTCCAGTATGcagtgaaaggggagagaggagaggtgaAATGCTACATAGCCAGTACACCTCCTCCTGATAAGATTGTGTGGGCGTGGAAGGAGAACGTGTGGGAGAAGGAGAAGGGGACGCTGCTGGAGCGCTACACGGTGGAGCAGAGCAAACCGTCAGCCGAGGGCGGCGGCGTCCTCTCCACCCTCACCATCAACAACGTGATGGAGTCGGACTTCCTGTCCACCTACAACTGCACGGCCTGGAACGCGTTCGGCCCGGGAACCATGATCATCTCATTGGAGGAGACTGAGGAAGTCCCAGTGGGGATAATAGCTGGTGGGACGGTGGGCTCCACCATCCTCCTATTCATCTTTCTGCTGGTCCTCGTTCTGATCTTCTACCGGCAACGCAAAGGCAGTCGGCGCGGGGTCACGCTGGGTAAGCCCGACATCAAGGTGGAGACCATAAACAAGGAGACCCACAGCTTGGAGGAGGACTCCGGCAGCGTGTCCACGGCTTCGCGCATGGTCAAGGCCATGTACTCGTTTCTCCCCTCTGTGTCCTtctctccttccaatcagcccTTTAAAGATGACATAGAGCTCAAGTCTGATCTCCGCAGCGACACCCTGGACACGCGCCAGGAGTATGACCTTAAGGACCCCACCAATGGCTACTACAACGTGCGAGCCTCCACCCACGATGAAGGCCGCCCTGCCTCCCGCTCCACCTTGCACTACTCTGACTACCGCTCCCCCGCAGGAACACCAGGGGGGGCTGCTTCCATTAGCAGCAGTGCCGGAGGCTCCGGAGCCACGGCCAGCGGAGGAGCCCCTTGTCCCCCTGGCCCCCTCACGTCCCCCGGCCGCCCCCAGGCCTGCTATGACCCGCGGCCCCCGTCCAGACTGTCCCACATCAGCTACGCCCAGTTCAACACCTTCACCCGTGCAGGCCAAAGCCAGCAGCCTCCGCCTAACCCCGCACCCATGGCCAGCGACTTCCAAGGAGACTGCAGCCTCCTGGACTCCACTTCCCAGCTGGCCTATGACAACTACGGCTACCCCTCGCATTACCAGACCTACCGCATGGGTTTTGCCCCATCCAGCCTGGCCCCGCTGGAGGCCTGTCCGTCCTACGAAATGTACGGGGTGGGATCCGGGGTGGGACCCGGGGTGGGACCCAGTGTGGGATCCGGGGTCGGGGGCCCCGGGGTCGGCGTGGGTCCCGGGGGTCCTGCTCCCTCGGGATCAGAGACTGGACTTGGGAAATACGGCAGCTCCACTCGCTTCTCTTACACCTCGCAACACTCTGACTACTCCCACAgccgacacacacagaggatgcAGACTCACgtttgagacagagagagagagaaagagacgcGTAACCACCTCACAGTCTTATAAATAGTGTCACatcggagaaaaaaaacacacacacacacacacacacacaatcatagactcacacgcacacattttcacacagtACCACAAACACAGACTACAGAACTAccgaagaaaaagaaaattcacacagacacacgcacagagtcAGAAGACCATGCCCACGAGACAGGGAGCGtatgagaaacagagagagggaaagagatgaTGGGAAGAGAGGAGTTTTAGCGAGACAGGGAAGGGAAATTCCACACAATTTTGAATTCCCTCACTCCCGATGTGTTTGTATATATCTGAGCTCTGAAAGAGCGAACGGCGCAAGTCACAATCAAGACTGGGAAAGAGAGCGAGAATCAGAGAGAGGACGCGAGATCACAGGTCTTTGGAGCCCTATAGCTTTTTGCTTATGAACTGACTTTGTAAATGATGAGAGAGAACGTCTTTAGGCAAACTAGACtgactgtcaaatatggtacaCGCCGATGGCGAAAAACCTCATCCAATGGAAGTCATTTCTGgccgccattttttttattttttttttttttgctggttgTCTTATTCAACAATCATtgagcacatatatatatataatatcccAGAATGCCCTTCTGTGCAGTGGTACATGGCACCATGCCTGTAAGGCGGCATTTGGGAGTGTGTTGGGGCTGgggtggggttggggggttGTCATCATTTTGCACTGCATCTACAGTATTCATGCTTAGACGTCCCTCAAATATATCTGTGTAATGTCTTCTTTTTATTTGCACACCACTCTAGAGCTTTGTATtctattttttaacattacagaATTATTTTTGTCAATGTAAAAACATGTAATGTGTACGTATGGACCAAAAGTTTGAACGTGAGCCCACTTAACTTGGGCGTTTGCCTGGGTGATTCCACTGAGACAGGGGGGAAGAGTTGTGCCAACAGCAGAGCCTGAATTCAggacgttttttgttttttttcttttcacatcaGAAGGGTATATCGGTGTATAAAAGAAACCTAGTGCCAAGTGTTTATGTTGTTCTTCACCTTAGACCATGTATATGCAGTAGAAGCTCCTTCTATTGGTGACTGTTGCTTTACAAACCAGGCTTGGGGCCTTGAGTCATTCCCAGACATTTTTCGTAGGCTGGAGCCTTTTTTTCTCGGGAGTTCCCAACTACAAGCTTGGTGCAGACggagagaaaaacacagaggttgggtttagaaCTGAGTGGCCTTATAGGGGAACATGTCGTACATTTCCATTTTGAATCATTCCTCATCGTCTGTCTGCCAAAACGGCCGGAGGAGAATGTGTATGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191261 lncRNA downstream 141771 7648972 ~ 7655508 (-) False LOC120572295
TU191234 lncRNA downstream 238105 7558812 ~ 7559174 (-) True G141781
TU191231 lncRNA downstream 275486 7521213 ~ 7521793 (-) True G141778
TU191227 lncRNA downstream 278522 7518509 ~ 7518757 (-) True G141774
TU191226 lncRNA downstream 278812 7518265 ~ 7518467 (-) True G141773
TU191424 lncRNA upstream 5893 7840921 ~ 7937490 (-) False LOC120573451
TU191425 lncRNA upstream 9077 7844105 ~ 7846084 (-) True G141912
TU191429 lncRNA upstream 100202 7935230 ~ 7987441 (-) False G141913
TU191440 lncRNA upstream 142846 7977874 ~ 7978789 (-) True G141920
TU191427 lncRNA upstream 151064 7986092 ~ 7987441 (-) False G141913
XM_039823415.1 mRNA downstream 1486 7787901 ~ 7795793 (-) True ndufs2
XM_039823554.1 mRNA downstream 9612 7781911 ~ 7787667 (-) True fcer1g
XM_039823362.1 mRNA downstream 16540 7757759 ~ 7780739 (-) True nectin4a
XM_039823539.1 mRNA downstream 40425 7750308 ~ 7756854 (-) True otub1b
XM_039821369.1 mRNA downstream 47482 7747779 ~ 7749797 (-) True cskmt
XM_039823186.1 mRNA upstream 5939 7840967 ~ 7859720 (-) True LOC120573451
XM_039823416.1 mRNA upstream 26692 7861720 ~ 7871073 (-) True LOC120573599
XM_039822143.1 mRNA upstream 39623 7874651 ~ 7961707 (-) True dock11
XM_039821451.1 mRNA upstream 128948 7963976 ~ 7968040 (-) True haus4
XM_039821604.1 mRNA upstream 164469 7999497 ~ 8000769 (-) True tifa
TU191399 other downstream 9684 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1426186 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1426186 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 1460520 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 1461647 6335494 ~ 6335632 (-) True LOC120573734
unassigned_transcript_685 other upstream 2193 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 147909 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 272619 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 272619 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 630054 8465082 ~ 8465612 (-) True G142077

Expression Profile