RNA id: XM_039823383.1


Basic Information

Item Value
RNA id XM_039823383.1
length 937
RNA type mRNA
GC content 0.45
exon number 4
gene id rnaseka
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5678216 ~ 5684661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTTCCGGTGTTCGGTCACAGTCACCTGACCGAACAAGTGACAGAAGTTTGAGCAGCAGGTCAACTTTTGTTAGTTAACAGAACCAGAACCGAGTGTTACAATGCGTGGGTTGATTTGTGGACCAAAACTTGCCGCGTGTGGGATTGTGTTGAGCACGTGGGGGGTTATAATGCTGGCCATGCTGGGGATTTTCTTCACCACACATTCAGCAGTGCTGATTGAAGACGTGCCTTTTACAGATCAAGACATCCACCAAGATATCAACCCTCCTCAGAGGATCTACGCCCTGTACAACCAGGTGGGATACAACTGCTTCATCGCAGCTGCTTTCTACATCCTGTTTGGATTCTTCTCCTGCTGCCAGATGAAGCTCAACAAGCGGAAGGAGTACCTGGTGCACTAGTGCCACCCGCTGGATGGAGGAGCTCCCAGAAGCACTCTGGCAGCAGGAGGCCGCGTTCGGGAGCTCGCAGCTCTTCTCTAATCACTGACTTCTGTCTCAGGGTTTAAAATTCCTAATCATAAACTacagtgggggtgggggggggagagagactgGCCGCTGTGTTGGGAGCAGATCGACGTTTTGCACCTTCATGTATTCAAGATGAGATTAATTCTACCTCTGAAGTGATGCAATGATTTGATTGTGGTGGTAAAAACTACCCACTGAAACGCTAATAGCTGTTGTTCTCCAGAGTCTCAGTGATTATTCTTGttaaaattgtttgtttttttaaaatctatactgtactgtacaataGAATGTATTTTTTGGTTATTGCCAGTATCAGTGTTTGGAATGTTAGTGTCATTAGATCTAGTTCTTTAGTTTCAGTGGACTTTTGTCTGTATGTTTTGAATGGTTGTCTTTATTCAAATGTCCAAGGTTGTAGTCCAGCATTCATTTCAAACATTAAAGATATGTGGAGTTA

Function

GO:

id name namespace
GO:0009303 rRNA transcription biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004521 endoribonuclease activity molecular_function

KEGG:

id description
K19770 RNASEK; ribonuclease kappa

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190699 lncRNA downstream 93690 5584162 ~ 5584526 (-) True G141394
TU190676 lncRNA downstream 113832 5560031 ~ 5564384 (-) False cd99l2
TU190665 lncRNA downstream 203078 5452292 ~ 5475138 (-) False nat16
TU190523 lncRNA downstream 469756 5208237 ~ 5208460 (-) True G141259
TU190491 lncRNA downstream 600000 5077628 ~ 5078216 (-) True G141233
TU190724 lncRNA upstream 26789 5711434 ~ 5711716 (-) True G141416
TU190757 lncRNA upstream 93138 5777783 ~ 5829468 (-) False G141439
TU190758 lncRNA upstream 93138 5777783 ~ 5829468 (-) False G141439
TU190833 lncRNA upstream 285306 5969951 ~ 5970613 (-) True G141467
TU190834 lncRNA upstream 286290 5970935 ~ 5971387 (-) True G141468
XM_039823379.1 mRNA downstream 57951 5616677 ~ 5620265 (-) True med11
XM_039823376.1 mRNA downstream 95221 5560026 ~ 5582995 (-) True cd99l2
XM_039821609.1 mRNA downstream 203061 5424561 ~ 5475155 (-) False nat16
XM_039821608.1 mRNA downstream 203061 5424561 ~ 5475155 (-) True nat16
XM_039821607.1 mRNA downstream 255114 5418473 ~ 5423102 (-) False LOC120572332
XM_039823385.1 mRNA upstream 42991 5727636 ~ 5735182 (-) True si:dkey-6n21.13
XM_039823386.1 mRNA upstream 56676 5741321 ~ 5757820 (-) True si:dkey-6n21.12
XM_039823387.1 mRNA upstream 100163 5784808 ~ 5821779 (-) True ache
XM_039823561.1 mRNA upstream 156772 5841417 ~ 5865750 (-) False LOC120573667
XM_039823560.1 mRNA upstream 156772 5841417 ~ 5855270 (-) True LOC120573667
TU190708 other downstream 77754 5596958 ~ 5600462 (-) True G141400
TU190492 other downstream 578134 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 718211 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 1014018 4641495 ~ 4664198 (-) True G141145
TU190759 other upstream 58914 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 58914 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 58914 5743559 ~ 5782623 (-) False G141439
TU190756 other upstream 93138 5777783 ~ 5843146 (-) True G141439
unassigned_transcript_681 other upstream 272406 5957051 ~ 5957132 (-) True trnal-aag_6

Expression Profile