RNA id: XM_039823385.1


Basic Information

Item Value
RNA id XM_039823385.1
length 3545
RNA type mRNA
GC content 0.43
exon number 2
gene id si:dkey-6n21.13
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5727636 ~ 5735182 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGGCGGTCCAACTGTCAAGTTCACTGATCCCCCCAAACTGCTGTGACGCTGATTCCTGCTGATGTCTCCTGATGTCTCCTGAGCTTCTTAAGTATCCAGGAAATAAGGTGTATTTTGAAGCTGCCGAGATAGCAAGCGAAAGACTTTCGGATGATTTTGTAGTTTCTCGTGATTATTCCGATGGGCGACAGAACGGGAGCCATATGGAGTAAAAGTCATCGCTGGCACAGGTGAACACCCGCTCATGGATCTGACCATGTGACATCATCTGAGAATCTACTGTACAGGATCATGCAAAACTAACATTAAACGATAGAGTATAAGGATGACAGAGAAGAAGCTTGACAGAACCCCAAATGTACAAGCCACAGCCTTGTTGAACTTCTCCATCACATGAAAATCCCTTCATCCATCACAATGTCATCCACAGGTGGAGTTCCTCCCAACATCAGTGTCTCAGTACTCCATGACTTACTTAgctcccccaccaccaccactccacCTCCATCTTGCAGCATAGACGAGTCCTACAAGTACATCTTCCTCCCCATCTGTTACTCTTTCACGTTCCTCTTCAGCATCTCCCTGAACGCCATCATCCTCTACCGTTCCTTCCGCCAGACCAAACGCTGGAATGCTTCACTGATCTACATGGTGAACCTAGCCTCTACAGACTTTATGTATGGCCTGTCACTGCCATTCCTTGTGGCTAGTTACATTATGCATGACCGCTGGGTCTTTGGGGACTTCATGTGCCGCCTGGTCCGTTTTCTCTTCTACTTTAACCTCTACTGCTCCATCTTCTTCCTCACCTGCATCTCTGTCCACAGGTACCTCGGTATCTGCCACCCAATGAAAGTCATCACACTTGAGACCAAGAAGGCTGTCAAGAGCACTTGTGTCCTGGTTTGGATTGTAGTGTTTGCTTTGACCTGCCCTATCTTCCGGTTTGCTCAGACTGGTCATGTAACAAGATTGGGAGGGCTTGGCGGCAATGCAAGCAGCATTGACAACCCAATCCATGAGGTATCATCAATAAATGGTAATGCCAGCTATGGTAACACGGGAGGGGTCATCACGGAGTACCAGAACTGTTGGGACGATGCCATAGATAAGGAATTTCCAAATTATATACCCTATGGCATCATACTCCATTTGCTGGgcttttttgtgcctttttccATAATTGCTTGGTGTTACTCTCACGTTGTTCTGACCATATTTAGGACTCTGCATTCTCAGCCCTCATCCAGAGGTCGAGGAGAGGGACGACATGGAggaacagagagaagagagagaaatagccCCGGAATAGTTGCAAGAGGAAGCAATGGACTGTCGAGGACACTGGAAAGAGATGAAGGGATATCCATTTTCCTTGGTGCCCATTCGCCTTATGCCAATCGCAGACGTAAATCTATCAAGaccatcatcaccatcacccTTCTCTTTGTGCTGTGTTTCTTCCCCTTTCATGTTACTAGAACCATCTTCCTCCTGCTGAAAGTGACCAAGGGAGTCCCCTGTCACACTATGACCATGGTCTCCATGTGCTATAAGATCACGAGGCCTTTGGCGTCGTTCAACGCATGGCTCAACGCCCTCCTTTACTTCTTGACTAAAGACAAGGGGGGAGCTCACTGCTGCCAGGCGGTAAGCACCACCACCCAACAACATGGTGGGCTTCTATTGCCACTGAGGATGATGGGAAAAGGAGAGGATGCAGAGGAGAGAGGGCTGGGAGACAGAAATGACAATAAGGAGACTAAAGCATTTCACAACAGTCCGTCATACATGAACAGAGCAAAAATCAGATATATAGTTGAATGAATGTTTTCATgaggaatgaaagaaagaatttTAGATGCACTGTAGGTTGACTTTTActggaaaaatatatatataatatatagaatGAGCACTGTAGCAAAAGCAATGATTAAAGAAGACCCAGAAAAGAAACCTTATATGCCTTTAATTTCTAATTGTATGTGCCTAAGTCATACTTGTACAAGTTATCCTGGGGGGTAAACATGAATGCAAATGTGACACCTCATTATGGTGATTATCTGTAATTTGGTTTTACAGGGtgtatatttaaaatgtgtttcagaGTAAACGGGCTACTTAGGGATCACTGATTTCTTTTCAAAGCCCGGCAATGTTTGAAAGAAGAAGTTGTTCGTACGATGTGCCATTCAAACACGTCTAAAGATAAAAGTGTTTCTACCTTCTCCGAATGGCTGCACTAGAAAAGTCATAGAGAGGAACAAGGAACAATGATCAGTCAAATGGGAATATCGGCGCACACTTTCAGACTTCTCTCCATGAAAGCATTCGTGGTGTTGCACTCTGTTGTATACGTACACAACAAATGCCTGAAGTAGTTCTGTGAAggatgaaaaaaacaaccttgcATACTTTTCCGTCTTTGCAGACTTGCCAATTGCTGTTAAAGTGTTGAGCAAGCTACATTGTATTTGTGGTGTGACATTCCACATGTAAGTGTTTTGTGAATACTCTGTTGACAGTGTGCTGGTGCAGTTACTGTCGCCTTGAAAATAAATACCCTCCCCTTTATTTGGAGAACCTCTGAGATGGCAAaataaaatgctataaaatgggGTTATTCATAGCAATATGACACCCCACTAATATGATATTGATACCGTATGTAAAAGCATCTCACAACAATTCTTGTAAATTTTAAGCGACAATCATACATTCACACCAACTTACACAGTGATTGGCCAGGTGTGTGGTTACTTTTTGTGTCTACAAACGAGTGCAACACCATGAATTCCTTCAAAGGGACACTGCCTGAAAGTGTGCTCTGTTATCTCCATTGAACCATTCATCATATCTTGCCCCTCTCTACGATAACAGGCTTTTTACCCCATCTTCAAATGTGGCCGTtcgaaaaaatgtcaaacactTTTGCCTGTTAGACCACACTTTGTTTGAACCCTTAGCTACTGTCAAGTTTTTGACCACCTCTGCAACATAGCCAGAatccatctttctttctttattgatcagataatttaattataatgtATGCATTCATTTCTTGCAAGCTGTTTTTTAGTAATTTTCTCTTGTCTAGCCTTTCCCAGTCATCTGTCAAAAGCCACAACACTGCTGCTAGAATCCAAACCCTAACCGGAACATTTGATCTCATCATGGCAACCATGATATAGCACCACTGACAGTGTCAGAGCAAACGCCAAAATACTCACCCTGGCAAGCGCCTTGATGCCTCTCAGAACTCATTACACCGTATAAACCACTCCATACTCTTTGTTGTCTGTATGGCTTTTCAGAATGCATGAAAAGTTATCCCATTTGAGAGCCTATTCCACAGTCGTAACCTTACTAAAGCTCCTTCCTTAGaaatctttaaagtgctcatataatgctcattttcaggttcataattgtatttagaagttATATTAGAATAGGTTTATAtcgtttaatttaaaaaaaaaaacactattgttgttgtactacacattgctgcagctcctcgtttaaccctgt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190724 lncRNA downstream 15920 5711434 ~ 5711716 (-) True G141416
TU190699 lncRNA downstream 143110 5584162 ~ 5584526 (-) True G141394
TU190676 lncRNA downstream 163252 5560031 ~ 5564384 (-) False cd99l2
TU190665 lncRNA downstream 252498 5452292 ~ 5475138 (-) False nat16
TU190523 lncRNA downstream 519176 5208237 ~ 5208460 (-) True G141259
TU190757 lncRNA upstream 42601 5777783 ~ 5829468 (-) False G141439
TU190758 lncRNA upstream 42601 5777783 ~ 5829468 (-) False G141439
TU190833 lncRNA upstream 234769 5969951 ~ 5970613 (-) True G141467
TU190834 lncRNA upstream 235753 5970935 ~ 5971387 (-) True G141468
TU190837 lncRNA upstream 254713 5989895 ~ 5992227 (-) True G141470
XM_039823382.1 mRNA downstream 42975 5679826 ~ 5684661 (-) False rnaseka
XM_039823383.1 mRNA downstream 42991 5678216 ~ 5684645 (-) True rnaseka
XM_039823379.1 mRNA downstream 107371 5616677 ~ 5620265 (-) True med11
XM_039823376.1 mRNA downstream 144641 5560026 ~ 5582995 (-) True cd99l2
XM_039821609.1 mRNA downstream 252481 5424561 ~ 5475155 (-) False nat16
XM_039823386.1 mRNA upstream 6139 5741321 ~ 5757820 (-) True si:dkey-6n21.12
XM_039823387.1 mRNA upstream 49626 5784808 ~ 5821779 (-) True ache
XM_039823561.1 mRNA upstream 106235 5841417 ~ 5865750 (-) False LOC120573667
XM_039823560.1 mRNA upstream 106235 5841417 ~ 5855270 (-) True LOC120573667
XM_039823451.1 mRNA upstream 166742 5901924 ~ 5921871 (-) False LOC120573619
TU190708 other downstream 127174 5596958 ~ 5600462 (-) True G141400
TU190492 other downstream 627554 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 767631 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 1063438 4641495 ~ 4664198 (-) True G141145
TU190759 other upstream 8377 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 8377 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 8377 5743559 ~ 5782623 (-) False G141439
TU190756 other upstream 42601 5777783 ~ 5843146 (-) True G141439
unassigned_transcript_681 other upstream 221869 5957051 ~ 5957132 (-) True trnal-aag_6

Expression Profile