RNA id: XM_039823547.1


Basic Information

Item Value
RNA id XM_039823547.1
length 1846
RNA type mRNA
GC content 0.54
exon number 9
gene id ecsit
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4518376 ~ 4528012 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTGTTTTGGGGGAAGCGAATGTGTGCAGGACCAGGATGTTCTGCCGGCTTTTCATCATGGAGGCGTCTACAGGGTGATTTCTGAAGGAGACTCATTTCTTCGTACGGCCGTCAGCATAAATGATATTTATACGCGATAGAAGTTGACTGAAGAACGTCTGTGAATAAAGCAGAGCCACTCTTCGGGTCGGTTAACACAAATGCATTGAACTcaattcatttaaaattcaACTCATTCAGTCAGTCAGCATCACAATCGTCTTCCACAACAAAATATATCCTGTTCTGTTCCCTGAAAGTCGGCGTGATGCCTCGACCATGAAGTGTGCTCGCTGCTTGCTCCAGCTGCAGTGTCTCAGACTGGTGGGCCAGTCAGCCAGGTCTGCTGCCCAGCATGGTGCTCTGCTCCGGTCAGCCTCCTCCAGTCAGCCTGACATGCTACATAACACCCAGGTGTTGAGGCGTTTCCACGGCAGCCCAGCATGTGCCAAGAGTCGACCCGTACCTGCAGAGTTCATCAATGAGGACGACAAGAAGAGGGACGAGAAGTCTCTGGTCGCCCATGACGACCTGTTTGAGCAGGTGGCCAAAGAGGTGAAAACCAAGGCCACGTTTAACAAAGTGGTGGACGTCTTCATCAAGAGAGACATCAGGCGGCGGGGTCACGTGGAGTTTATCTACGCCGCGTTGAAGAAGATGCCGGAGTTTGGCGTGGAGAGAGACCTGGCCGTCTACAACAAGCTGCTGGATGTTTTCCCCAAAGAGGTGTTTGTGCCCAGGAACTTTATCCAGCGAATGTTCAACCACTATCCCCGGCAGCAGGAGTGCGGAGTGCAGTTACTGGAACAGATGGAGAACTATGGTATCATGCCCAACATGGAGACCAAAGTCCTGCTGGTCCAGATCTTTGGGGAGAAGGGCCACCCCATGAGGAAGTACCAGCGCATTATGTACTGGTTCCCCAAATTCAAACACATAAACCCCTTCCCCGTCCCCCAGCAGCTGCCTGAAGACCCAGTGGACTTGGCCCGCTTCAGCCTCACTCGCATCGCTAATGACCTGGATGCGAAAGTCACCGTCTACCAGCTGCCCTctacagacattacagagaGCGGAGAGCAGATCACACTGCCACATATAGTAGGCATCCAGAGCCCCAGCCAGATGGAGCTGCTGGCCCAGCACAGCCCCAGCAGGCCCGTGTTTGTCGAGGGCCCCTTCCCTCTGTGGCTGAGGAAGACGTGTGTGTACTACTACGTCCTCAGGGCTGACCCCACGCCGCCTGACGAGAAGGTTGAGGAGCCCTTTGACCCAGAGAGGTGTTTGGCCTTCCCTCTGCAGCTAGACCTGGATCTGGACCGTGACTTTGGGGACGAGGAGAGCTTCGATGTGGAAGACTTGGATGAGGGTCCGGTCTTTGCCATGTGTATGACCAGCCAGGGAGACCAGGCCGTCCTCAACCAGTGGATCTCTGGCCTCCAGCAGAACAACCCCATCCTGGGTCAGGTCCCCACTCTGTTCCGCCTGGACCCTGGGCCCCGGGAGCTGCAGGGGCCGGCTGACACCGAGTCAGCCCACCACCACAGGACAGACAGGccccagagagaggagagacagccTGAAGAAGACGAAGAGCCGAGGAGAAGCCAGGGGGCCAAGTGGTGAATATCAGTCAGACTGTGAAATCCTGTCTAGTATATATAGCTGATTTAGAAGTCTATGTCCATGCTGGGGTAGTGTGAGCTACTGGTTCATTTAATTGGGGAACACACCAACTGAGAGAGGAGGACTCTGAATAATGCTTGTAAGATTCAGAAAtccaataaattaaattaaacaaaaaa

Function

GO: NA

KEGG:

id description
K04405 ECSIT; evolutionarily conserved signaling intermediate in Toll pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190332 lncRNA downstream 28872 4489300 ~ 4489504 (-) True G141117
TU190330 lncRNA downstream 31910 4485903 ~ 4486466 (-) True G141115
TU190329 lncRNA downstream 33594 4483738 ~ 4484782 (-) True G141114
TU190317 lncRNA downstream 36330 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA downstream 36330 4478430 ~ 4482046 (-) False G141109
TU190376 lncRNA upstream 126152 4654164 ~ 4656332 (-) True G141155
TU190441 lncRNA upstream 200086 4728098 ~ 4730999 (-) True G141193
TU190453 lncRNA upstream 242960 4770972 ~ 4772477 (-) True G141202
TU190429 lncRNA upstream 245616 4773628 ~ 4829146 (-) False peli3
TU190430 lncRNA upstream 255001 4783013 ~ 4804388 (-) True peli3
XM_039822102.1 mRNA downstream 20169 4486570 ~ 4498207 (-) True si:dkey-106g10.7
XM_039822103.1 mRNA downstream 20170 4486570 ~ 4498206 (-) False si:dkey-106g10.7
XM_039821430.1 mRNA downstream 71026 4436370 ~ 4447350 (-) False men1
XM_039821429.1 mRNA downstream 71049 4436370 ~ 4447327 (-) False men1
XM_039821431.1 mRNA downstream 73474 4435605 ~ 4444902 (-) True men1
XM_039821487.1 mRNA upstream 265466 4793478 ~ 4829162 (-) False peli3
XM_039821486.1 mRNA upstream 265466 4793478 ~ 4829162 (-) False peli3
XM_039821482.1 mRNA upstream 265466 4793478 ~ 4829162 (-) False peli3
XM_039821485.1 mRNA upstream 265466 4793478 ~ 4829162 (-) False peli3
XM_039821484.1 mRNA upstream 265466 4793478 ~ 4829162 (-) False peli3
TU190189 other downstream 243102 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 243102 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 243102 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 243102 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 362829 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 113483 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 132609 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 430667 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 571693 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1068946 5596958 ~ 5600462 (-) True G141400

Expression Profile