RNA id: XM_039823560.1


Basic Information

Item Value
RNA id XM_039823560.1
length 3349
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120573667
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5841417 ~ 5865750 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGGACAAACTGATGTCACTTCCACAACAGATGAAGTTGGTACTACGGATGTAACAACTGGGCAAACTATTGGCACGTCCACAACCGATCAATCTGGAAGCACTGAGCTAACAAGTGAGCAAACTGATGGCACCTCTCCAACTGATCAGACTTTTACAACAAATGAATCGCCCACAGCTCAGTCCAGTGAGACCTCCTCAACAACCGACCAAACTGATACAACTTCTGCAATGTTAACGACTGAGTCCACGAATCCCACTGCAACTTCTGACCAAACTGCCACAACAGTCTCAATGTTGTCAACAGAGTCCACTGATGCAACGTCTTCCACTGACTACATCACAACCACTGAATCAACTGTAACAAGTGAAACCACTGAGGGCACATCCACATCTGATTCATCTGGTACGACTGAGGTAACAACTGGACAAACTGATGTCACTTCCACAACAGATGAAGTTGTTAGTACGGATGTAACAACTGGGCAAACTATTGGCACGTCCACAACCGATCAATCTGGAACCACTGAGGTAACAAGTGAGCAAACTGGTGGCACGTCCACAACTCATCCATCTGGGACAACGGAGGTTACAAGTGGGCTAACTGATGGCACCTCTACAACTGACCAGACTTATATAACAGATGAATTGTCCACAGCAAAGTCCACTGACACCTCTTCAACCACCATTAAAACCTATCCATCTGCTGCAATTTTAACAACTCAGTCTACTGATGCCACCGCAACTTCTGACAAAACGGCCACAACGGTATCAATCTTATCAACTCTGTACACTGATGCAACTTCTTCCAATGACTACACCACAACCACTGAATCATCTGTAACAAGTGAACCCACTGAGGGCACATCAACATCTGATCTATCTGGTACGACTGAGGTAATAAGTGGACAAAGTCATGGCACCTCCACAACTGATGAATTTGGTACCACTGAGATTACAACTCCACCAACTGGTGGCACGTCCACATCTGATCAATTTGGAACAACTGAGGTAACAATTGGACAAACTGATGGCACTTCCACAACAGATGAAGTTGGTACTACGGATGTAACAACTGGGCATATTATTGGCACGTCCACAACTGATCAATCTGGAACCACTGATTTAACAAGTGAGCAAACTAGTGGGACTTCTACAACTGATCAATATGGGACAACTGAGGTTACAAGTGTGCAAACTGATGGCACCTCTACAACTGGTCAGACTTTTACAACAAATGAGTCCTACACAGCTGTTTCCAGTGATGCCACTTTAACAACCGACAAAACTGATACAACTGCTGCAATGTCCACTAATCCCACCACAACTTCTGACCAAACTCTCACGAATGGTGCAACTTCTTCCAATGTTTACATCACAACCACTGAATCAGCTGTACCAAGTGAAACCACAGAGGACACATCCACAACTTATCCATCCAGAACAACCGAGGTAACAAGTGGGCCGACTGAAGGCATCTCAACTCATCAATCCGATAAAACTGATTTAACAACTGTGCAACTAACCACACCATCCACTAACCCACCCACTCAGCCACCATCAACAGCCCCAACTAACCCTCCTACAAATCCAGCAACTCACCCAACCACTGAACCAACAGTTTCCACCGTGGAGCCACCAAAATGTGAGAATGGAGGAACATTCAATGGATACAACTGTACATGTCCTATTGGATTATTTGGACTTGCTTGTGAGATGGTTACTCATGTTGAGTCAGATATAATCACAAGAACGGCATTGGTTAATTTGGTGATCAACCAAGAATATAATGTAAAATATGAGGACAAAACATCACGTGAATACAAAGAATTTGTTGGGAACTTCACTAACCAGATGAAGAAATATTACCTGGCAAAACAGATACCAAACTTTAAAGAAGTGGTGGTAATTAGTGTCAGCCCTGGAAACCCTTTGGTCAGATTCTCAAATAACACTGTGGATGAGATAAAATTATGGGATGAAGCCATGGCGATCTACAGTATTAAACCAAGAGCAAAAGGGGTTAATGTCACACATTATGTGGGTCTGGAGATTCCAAATAATGCTAGTGCTGAAGAACTGTATAAGGAAGATATTGAAGCTATTAAGCAGGCTGTTGATGGCCTTCTTAGCTGCACAGGAGAATGTCCTGATTTCAACGTCACCGCTCCACCCACAGTGATTACAACGGAGGCTGATTTGGGATCGATCTGTGAAGAGTTTGTTAAATATACAGATATTGCTATATACTACCAACCTGTGCACATTGATGGAAAGATAACATGTGTGACCGCATGCCACAGTCAACATTCAAATCATAAAAGATGCTACAACAGCGGACTCTGCATAGTATACAAAGCCACTGGACCTTTTTGCAAGTGTCATAACGTGGCTGAGACTTGGTACTTGAATGAGGACTGTAGCATACCTATACACAGGACTGCTTTCTATGCAGGGTTAAGTGGGACCCTTGCTTGTCTGTTAGTGATAGTGGGAGTCTTGACTGCATTCTTACTGAGgaacaaacaaagacaaaagagGAGAAGAGACATTAAAGAGCAGCTGGTGAACCAATGGCTGAATGAGGACTTTGAGTGGCCCAGATCCAGCCATCCTGCCATTCACAATGCTGGAGATCTCCACAACCTTGCTTACACACATGAAGACTCTGGACCGTCTTTGGATACTGACGACAGACCGCCGAGCTCATCCGCGAGTATTTACGGGCTGGACACTGAGTACCAGCTGTCAGATACACCATACAGACACAATACTCCAACTACTAATACTCTCTCATTTTCTAATGCTGGACACCCACAATCTGCCAGCCTGCCTCAACCTAAGAGAAACTTCTCACCTCAGCTGTTGAGGATCAGCAGGCCTCAGATAAAGACATCGTGGGATGCCTGAGCCCTAAGTCTGCATCATTATGGACAAAGTCTCCGTTCGTCTGTCAAACTGTTGACTCTGACACTTGctcttaaatatttttttatggctttctgaatataatatatacatatctaTACGTACTGCTTTTAGgggtttgatttatttatttatttatttatttgtgtattttaaaaTGGCAACAGGGTAAATGCGTATTTTCTGTCTTcctcatgaggaattctaagtaatgacaacaaaactgtcggcgtgtccacatgatacatgTCATCCGTGTGACCGGTGCTGTCTTGCAAAACATTTAAGATTTTGACTCTGGGACACCTTATTGACTGCCTGGGCAATGCCATATTACCTattgattagattagattagattagattcaactttattgtcattgtgcagagtacaagtacaaagatgaaatgcagtttgcgt

Function

GO: NA

KEGG:

id description
K22016 MUC3_17; mucin-3/17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190757 lncRNA downstream 11949 5777783 ~ 5829468 (-) False G141439
TU190758 lncRNA downstream 11949 5777783 ~ 5829468 (-) False G141439
TU190724 lncRNA downstream 129701 5711434 ~ 5711716 (-) True G141416
TU190699 lncRNA downstream 256891 5584162 ~ 5584526 (-) True G141394
TU190676 lncRNA downstream 277033 5560031 ~ 5564384 (-) False cd99l2
TU190833 lncRNA upstream 114681 5969951 ~ 5970613 (-) True G141467
TU190834 lncRNA upstream 115665 5970935 ~ 5971387 (-) True G141468
TU190837 lncRNA upstream 134625 5989895 ~ 5992227 (-) True G141470
TU190999 lncRNA upstream 300782 6156052 ~ 6157413 (-) True G141601
TU191007 lncRNA upstream 344038 6199308 ~ 6205730 (-) False gal3st4
XM_039823387.1 mRNA downstream 19638 5784808 ~ 5821779 (-) True ache
XM_039823386.1 mRNA downstream 83597 5741321 ~ 5757820 (-) True si:dkey-6n21.12
XM_039823385.1 mRNA downstream 106235 5727636 ~ 5735182 (-) True si:dkey-6n21.13
XM_039823382.1 mRNA downstream 156756 5679826 ~ 5684661 (-) False rnaseka
XM_039823383.1 mRNA downstream 156772 5678216 ~ 5684645 (-) True rnaseka
XM_039823451.1 mRNA upstream 46654 5901924 ~ 5921871 (-) False LOC120573619
XM_039823450.1 mRNA upstream 46654 5901924 ~ 5921871 (-) False LOC120573619
XM_039823452.1 mRNA upstream 46654 5901924 ~ 5921871 (-) False LOC120573619
XM_039823449.1 mRNA upstream 46654 5901924 ~ 5921871 (-) True LOC120573619
XM_039823468.1 mRNA upstream 90762 5946032 ~ 5955060 (-) True snapc2
TU190761 other downstream 58794 5743559 ~ 5782623 (-) False G141439
TU190708 other downstream 240955 5596958 ~ 5600462 (-) True G141400
TU190492 other downstream 741335 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 881412 4958679 ~ 4960005 (-) True G141219
TU190380 other downstream 1180306 4660621 ~ 4661111 (-) True G141159
unassigned_transcript_681 other upstream 101781 5957051 ~ 5957132 (-) True trnal-aag_6
unassigned_transcript_683 other upstream 173571 6028841 ~ 6028922 (-) True trnas-uga_22
XR_005641400.1 other upstream 366701 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other upstream 366701 6221971 ~ 6226806 (-) False LOC120572220
XR_005641774.1 other upstream 480224 6335494 ~ 6335632 (-) True LOC120573734

Expression Profile