RNA id: XR_005641417.1


Basic Information

Item Value
RNA id XR_005641417.1
length 413
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120572308
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1966607 ~ 1967650 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attgatttatagttgaccgggaaatatgattgaaaagcCATTGATTTTTGATTGACCGGGAGATCATCGGGTTGTAGACCAACGTACTGCACCGGACACATCTCATTTCTGGACTCTTGGGGCGAATACGATCAGAGAGGAAAATGCCAGGCGgagagggaagaaaagagaTCACCTGCCAGAGGGACTGAAGCAAGTAAAAAGatgctCTTACACAGCAGATGGGGACAGCCAGCGTCACCCAATTTACTTTTGCCCAGGCCGTGCAACAGTTGCTGCGCTATGTATCAGACCAGGCAGGATGGACTGGACGACAATCAGTCAGACGTCAGAGGACCATGAACTGTAACTATGCTAAAGaggacaaataatgaaataagaggctaataaaatgaatttgtttttaccttAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189658 lncRNA downstream 2775 1959644 ~ 1963832 (-) True G140603
XR_005641429.1 lncRNA downstream 25239 1938467 ~ 1941368 (-) True LOC120572355
TU189641 lncRNA downstream 29581 1929377 ~ 1937026 (-) False LOC120573528
TU189644 lncRNA downstream 29581 1934477 ~ 1937026 (-) False LOC120573528
TU189646 lncRNA downstream 30316 1929377 ~ 1936291 (-) False LOC120573528
TU189687 lncRNA upstream 88639 2056289 ~ 2059027 (-) True G140619
XR_005641376.1 lncRNA upstream 115015 2082665 ~ 2085669 (-) True LOC120572143
TU189744 lncRNA upstream 126717 2094367 ~ 2195674 (-) True G140675
TU189755 lncRNA upstream 186719 2154369 ~ 2154765 (-) True G140683
XR_005641448.1 lncRNA upstream 307561 2275211 ~ 2275993 (-) True LOC120572445
XM_039823219.1 mRNA downstream 80920 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 191689 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 191715 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 301662 1660137 ~ 1664945 (-) True LOC120573508
XM_039821465.1 mRNA upstream 51962 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 55369 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 486417 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 486417 2454067 ~ 2573483 (-) True camk2d1
XM_039821763.1 mRNA upstream 486417 2454067 ~ 2573483 (-) False camk2d1
TU189195 other downstream 1514937 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1539123 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1547601 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1549526 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1550739 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 83831 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2187274 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2307001 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2307001 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2307001 4274651 ~ 4275274 (-) False G141027

Expression Profile