RNA id: XR_005641430.1


Basic Information

Item Value
RNA id XR_005641430.1
length 219
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120572356
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 368338 ~ 369120 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAACACCAGGCTCCTTCCATCCACACACCACAACCACACCAGGCTCCTTCCATTCAGGAACCACCACAGCAGGGTCGACAGCGACAGAAAAGAGCCAAAAAAGTTAAAGATTGCCCTCACAACCAGCTTGACATGTTCCCAGTCAGTGAAATAATAAAGACAAGGATCAGAAAGGGGAGGATGGAACACCTTTATAACTGGCAGCCCTGCACTCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189185 lncRNA downstream 30575 337542 ~ 337763 (-) True G140264
TU189175 lncRNA downstream 58717 309384 ~ 309621 (-) True G140254
TU189170 lncRNA downstream 87475 280547 ~ 280863 (-) True G140249
TU189161 lncRNA downstream 149439 218502 ~ 218899 (-) True G140240
TU189159 lncRNA downstream 196670 171459 ~ 171668 (-) True G140238
TU189189 lncRNA upstream 4717 373837 ~ 374216 (-) True G140268
TU189191 lncRNA upstream 50896 420016 ~ 420235 (-) True G140270
XR_005641692.1 lncRNA upstream 51807 420927 ~ 421529 (-) True LOC120573351
TU189196 lncRNA upstream 73536 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 130138 499258 ~ 499616 (-) True G140285
XM_039823396.1 mRNA downstream 230101 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 231514 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 231514 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 537425 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 649138 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 649138 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_660 other upstream 10391 379511 ~ 379582 (-) True trnam-cau_27
unassigned_transcript_661 other upstream 11047 380167 ~ 380248 (-) True trnal-uag
unassigned_transcript_662 other upstream 12580 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_663 other upstream 13656 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_664 other upstream 14320 383440 ~ 383521 (-) True trnal-uag_1

Expression Profile