RNA id: XR_005641447.1


Basic Information

Item Value
RNA id XR_005641447.1
length 1709
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120572441
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2908630 ~ 2910625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAGATAGCCCAGCAATCAAATCCTTCCTTTATCAGAATCCAAGGCTGCATGAGGGGAAAATTATCATATTCAATGTCCTTTGGGACTGATAAgtcaaggaggaggaggggttgAGGGTGGTTTGTAGGGGGGATGAACTTGAAAGCTGACCATTGGATGTTTTACTGAGGAATGACAGCCCTGGCTGAGCAGCTGTAGCCGGCTGAGGTTTGTGGCCGAGACTCCTGCATGCGTTTTGGATTTGTGAAACAGCTGTGGTAAAGAGTTGGGAGAGATCATGACAGCCAAATAGTGAAAGGGCAGAAACGGGCCAGAGAGGTAGATTCCATTCAGAAGATTGGAATGGATTTTGGTGCATCGGGCATGGctacagcacaaacacacagaggaaaTCAGTGATGCTTTTCGTGGACCAGACTCCATCCACAGGGGGAAAAGAAAACGTTCAACTTCCTGGCTAGAAAACTGAACTGACAAGCAGCTACCAACCGACATGCCCACAAACAGGGGATTCCGAGAGTTCCGTAGATTAATTGTTACTCTTGGAAAGGTTTTTTCGGAAAATCAGCAAAGCACCTAAAGCATACTGAAGCCTTTTCTCACATTCAGGGTGATGAGTTTAACACTTCCAGCTTGTTTGGaacaaacacaagaattaagtaGAAAGACAAAGTAAACAGATCTACCTACACATGATCAGCTTTGCAAAGCGAAGACACTGAGCCTTACAACAGCGCCTTCTTAGGTCTTACATCTTACTTGGACTTGGATTTACCGCCTTGTCTGCCTCAAAGTTCAGTAAGTTTCAACTCTGACCTCATTTGTCAGTGGCCTATCAATGTGCACAAAATGAGTTTACAGCTGTCTGTCACCTAAGATAACGGGACCAGTGATGGACGATGCCCCGAATCTTTGTTCATAGTGGGGTTCTTACTCATCTTATTCTCCAATGGACAATTATTTCCAGTGCATTGTTTTGTGGAAATACAGTCTTTGCTTGGCTTGTTGTTTAAATTTCCCGGCACTCATTGCTGACGTAAACCCCTGTGCTCCGCCTCCACGGAGGGCCTGACAGCAAATCCAAGGAAAGAGTCATCCCAGTACCCACTCGCACTACGTGACTGAGGGGTGATTTCTGGgaagaacaaaaaataaatgccaCAGCAATGAGCCGCTGAGCAACAAAGATGTAGGTAGAGTTTCAAGTCAACCTGCTTCACCGCTACCACCTCCAGTTATTGACTCCATacatccacacaaagcacactCTCTGATCTCAACCAAATGTCATGACATTTTGAACGCTCCATCTCTCTGTTACTGCTTCAAAGTGCAGCCAAGCACAGGCAGAGTGAATGGAAATGGATTCCATactcacacacagatgcatttgatttaataaaagagctGGGCCTGTATTTCTTAATTTATTCTGAATCTCTCAGAGGAATTACGCTGTAGGAAgtttgatttcatgtttttattaggTTGCATGGAGGGTAATCTTTATTATCATACAATATTAACTTGAAACCTTCCTTTCCATTTGTTTTAAGAGGTGAGGTAATGAAAGGAGAAGAGAAGGCAGATAAAACTTGCCTGGAGCTGATAAAAACAGGACCactctgccacacacacacacacacacagacacacacactctttttaGGAACAGGTGCTTTCCATCCTGTGAGATGGTCTTGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189845 lncRNA downstream 84012 2824313 ~ 2824618 (-) True G140762
TU189844 lncRNA downstream 84399 2822870 ~ 2824231 (-) True G140761
TU189832 lncRNA downstream 179011 2729281 ~ 2729619 (-) True G140753
TU189829 lncRNA downstream 217585 2690317 ~ 2691045 (-) True G140750
TU189828 lncRNA downstream 218383 2688754 ~ 2690247 (-) True G140749
TU189918 lncRNA upstream 228555 3139180 ~ 3140180 (-) False LOC120573530
TU189966 lncRNA upstream 242274 3152899 ~ 3153336 (-) True G140842
TU189980 lncRNA upstream 369788 3280413 ~ 3433666 (-) True G140855
XR_005641695.1 lncRNA upstream 408400 3319025 ~ 3321057 (-) True LOC120573362
TU189989 lncRNA upstream 408693 3319318 ~ 3320719 (-) False LOC120573362
XM_039822857.1 mRNA downstream 89971 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039822910.1 mRNA downstream 111099 2678945 ~ 2797531 (-) False pde5ab
XM_039822909.1 mRNA downstream 139025 2678945 ~ 2769605 (-) False pde5ab
XM_039822908.1 mRNA downstream 139026 2678945 ~ 2769604 (-) True pde5ab
XM_039821280.1 mRNA downstream 286530 2598346 ~ 2622100 (-) True arsj
XM_039823055.1 mRNA upstream 206609 3117234 ~ 3128616 (-) True c14h4orf54
XM_039823321.1 mRNA upstream 228496 3139121 ~ 3143189 (-) True LOC120573530
XM_039823056.1 mRNA upstream 256243 3166868 ~ 3252975 (-) True focad
XM_039823625.1 mRNA upstream 544895 3455520 ~ 3457848 (-) True LOC120573709
XM_039822508.1 mRNA upstream 893361 3803986 ~ 4118384 (-) True adam19a
TU189682 other downstream 850439 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2456960 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 2481146 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 2489624 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2491549 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1244299 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 1364026 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 1364026 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 1364026 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 1364026 4274651 ~ 4275274 (-) False G141027

Expression Profile