RNA id: XR_005641692.1


Basic Information

Item Value
RNA id XR_005641692.1
length 414
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120573351
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 420927 ~ 421529 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agatCAATGGATAGCTTTGTCATTAACACTTTGACAGAGTGCCAGACCTTGTCGAAAGATTTAAAGtAGCTTCCATGTAATGTGTCAAAGTGACTCCAATAGATGAATAGAGCCAGCCACTGGATTCCTGGAGGAAAGGCTGCGGAACGTCAGGAAGCGGCTGAGATCAACCAGCAGGTCGCAGAGCACGGCACAGACACCACCACAAATGCCAGATGATGGCGCTCTTGCAAGGGCTCTCATACCAGAATGTACCATATCAGACGAACGTGAGTCACAGCTTAAAGAATGGTTGAGAAACAATTCTCAGCCCCTCAGCCAGATAGAGACCTACATGCGGAACACGGCAGTCTACAGGGCCAAGTGGATTAGGGACAACAATTGGACCATCGATCAGATCCTCGAAGAGTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189191 lncRNA downstream 692 420016 ~ 420235 (-) True G140270
TU189189 lncRNA downstream 46711 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 51807 368338 ~ 369120 (-) True LOC120572356
TU189185 lncRNA downstream 83164 337542 ~ 337763 (-) True G140264
TU189175 lncRNA downstream 111306 309384 ~ 309621 (-) True G140254
TU189196 lncRNA upstream 21127 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 77729 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 78711 500240 ~ 523058 (-) True LOC120572316
TU189213 lncRNA upstream 134873 556402 ~ 556667 (-) True G140291
XR_005641701.1 lncRNA upstream 203684 625213 ~ 626442 (-) True LOC120573382
XM_039823396.1 mRNA downstream 282690 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 179105 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 179105 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 485016 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 596729 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 596729 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_679 other downstream 1921 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 3846 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 5059 415797 ~ 415868 (-) True trnam-cau_40
unassigned_transcript_676 other downstream 7488 413368 ~ 413439 (-) True trnam-cau_39
unassigned_transcript_675 other downstream 11119 409737 ~ 409808 (-) True trnam-cau_38
unassigned_transcript_680 other upstream 5874 427403 ~ 427484 (-) True trnal-aag_5
TU189195 other upstream 22021 443550 ~ 451670 (-) True G140274
TU189682 other upstream 1629952 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3733395 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3853122 4274651 ~ 4275274 (-) True G141027

Expression Profile