RNA id: unassigned_transcript_685


Basic Information

Item Value
RNA id unassigned_transcript_685
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-ucu_15
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7837221 ~ 7837294 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAGTCCCGGCAGAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191261 lncRNA downstream 181713 7648972 ~ 7655508 (-) False LOC120572295
TU191234 lncRNA downstream 278047 7558812 ~ 7559174 (-) True G141781
TU191231 lncRNA downstream 315428 7521213 ~ 7521793 (-) True G141778
TU191227 lncRNA downstream 318464 7518509 ~ 7518757 (-) True G141774
TU191226 lncRNA downstream 318754 7518265 ~ 7518467 (-) True G141773
TU191424 lncRNA upstream 3627 7840921 ~ 7937490 (-) False LOC120573451
TU191425 lncRNA upstream 6811 7844105 ~ 7846084 (-) True G141912
TU191429 lncRNA upstream 97936 7935230 ~ 7987441 (-) False G141913
TU191440 lncRNA upstream 140580 7977874 ~ 7978789 (-) True G141920
TU191427 lncRNA upstream 148798 7986092 ~ 7987441 (-) False G141913
XM_039823090.1 mRNA downstream 2193 7797279 ~ 7835028 (-) False kirrel1a
XM_039823092.1 mRNA downstream 2193 7797279 ~ 7835028 (-) False kirrel1a
XM_039823089.1 mRNA downstream 2193 7797279 ~ 7835028 (-) True kirrel1a
XM_039823415.1 mRNA downstream 41428 7787901 ~ 7795793 (-) True ndufs2
XM_039823554.1 mRNA downstream 49554 7781911 ~ 7787667 (-) True fcer1g
XM_039823186.1 mRNA upstream 3673 7840967 ~ 7859720 (-) True LOC120573451
XM_039823416.1 mRNA upstream 24426 7861720 ~ 7871073 (-) True LOC120573599
XM_039822143.1 mRNA upstream 37357 7874651 ~ 7961707 (-) True dock11
XM_039821451.1 mRNA upstream 126682 7963976 ~ 7968040 (-) True haus4
XM_039821604.1 mRNA upstream 162203 7999497 ~ 8000769 (-) True tifa
TU191399 other downstream 49626 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1466128 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1466128 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 1500462 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 1501589 6335494 ~ 6335632 (-) True LOC120573734
TU191428 other upstream 145643 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 270353 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 270353 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 627788 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 679729 8517023 ~ 8541543 (-) False LOC120572366

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01024079_01086671.mRNA False 4535 mRNA 0.44 30 CI01000344 1023396 ~ 1086671 (-)
rainbow trout (Oncorhynchus mykiss) trnar-ucu-121 True 74 mRNA 0.59 1 NC_048592.1 1642138 ~ 1642211 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1284 True 72 tRNA 0.56 1 NC_053133.1 3168787 ~ 3168858 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucu_12 True 74 tRNA 0.59 1 NC_047615.1 10187751 ~ 10187824 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1284 True 74 tRNA 0.59 1 NC_056705.1 12683158 ~ 12683231 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_12 True 73 tRNA 0.53 2 NW_019172695.1 630 ~ 719 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_40 True 74 tRNA 0.59 1 NW_019172835.1 896993 ~ 897066 (+)