RNA id: TU208227


Basic Information

Item Value
RNA id TU208227
length 229
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G153684
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10399125 ~ 10399353 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGATTTTAGATCATTTTTAGGCGGGCTCaagcaataaaaacaaattctttttttttctttaaaaaaaaaaaaaattttggtgcttcaagttagagtttgtgtactgaggacaaacaattacggGTTCAAacaaacaggtttaatatcctgtgtcgctgtcgccaatgctatgcacctgtaactcAGTCAAggaaggttttattttttatatatatttattgtttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208163 lncRNA upstream 163186 10169942 ~ 10235939 (+) True G153640
TU207800 lncRNA upstream 445770 9950608 ~ 9953355 (+) True LOC120574664
XR_005641879.1 lncRNA upstream 448253 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA upstream 448253 9948607 ~ 9950872 (+) False LOC120574664
TU207847 lncRNA upstream 464087 9921552 ~ 9935038 (+) True G153423
TU208283 lncRNA downstream 203064 10602417 ~ 10602964 (+) True G153740
TU208291 lncRNA downstream 210238 10609591 ~ 10638479 (+) True G153746
TU208356 lncRNA downstream 310015 10709368 ~ 10709629 (+) True G153799
TU208383 lncRNA downstream 387509 10786862 ~ 10818172 (+) False G153817
TU208380 lncRNA downstream 413375 10812728 ~ 10818172 (+) True G153817
XM_039826260.1 mRNA upstream 777 10394107 ~ 10398348 (+) True lgals2a
XM_039824224.1 mRNA upstream 46626 10337243 ~ 10352499 (+) True sgsm3
XM_039824223.1 mRNA upstream 46626 10337243 ~ 10352499 (+) False sgsm3
XM_039824225.1 mRNA upstream 46626 10337243 ~ 10352499 (+) False sgsm3
XM_039823677.1 mRNA upstream 112584 10209890 ~ 10286541 (+) True LOC120573826
XM_039824439.1 mRNA downstream 18665 10418018 ~ 10559589 (+) False cacna1ia
XM_039824434.1 mRNA downstream 18668 10418021 ~ 10575177 (+) True cacna1ia
XM_039824436.1 mRNA downstream 18668 10418021 ~ 10575177 (+) False cacna1ia
XM_039824435.1 mRNA downstream 18668 10418021 ~ 10575177 (+) False cacna1ia
XM_039824437.1 mRNA downstream 18668 10418021 ~ 10575177 (+) False cacna1ia
TU208172 other upstream 57502 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 332383 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 424552 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 460521 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_844 other upstream 462844 9935671 ~ 9936281 (+) True LOC120574414
TU208368 other downstream 352807 10752160 ~ 10752898 (+) True G153808
XR_005641865.1 other downstream 665069 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 1686508 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 2444070 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 2617633 13016986 ~ 13020668 (+) False LOC120574968

Expression Profile