RNA id: TU208383


Basic Information

Item Value
RNA id TU208383
length 2336
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G153817
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10786862 ~ 10818172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACTGCTcaccagaagaagaaaaagtgaaCAATAGCGTTTTGTTATGGACAGAAGCTACAAATGGGCTATTCTTCAGATCCCTTTGGTAGGAAACCGAGGACTTCCCCCCTCTGACCTTTGGACAGCATGCAGAGGCAGTTCTCACTTTACAAACAGAACTGAAACCAATTGACGATCTGTTCACAGATGTGTGTTCACAATTGTGTGCTCACAGGTGTGTCTTCACAGATGTGTTTTCATGTGCAGGGTGTAAAcgtgtgtttgtttacatgttgtgagaAATGGTGTATATGTATTGTCTTTTACATGAGAAAGTATTGTCTCAGCCATCTCACCTGTTGCGACAGGTGCAGCCAGGGGCGGAGCACCTGCCAGATAAAGCACAGTTTACCAAAGCAGGAAAGGACGATTCAGAAAAGATTTCCATGAATCACTTATTGTTTATTGAAATTGTTAagaggataaccccttgagatgaagcaTCTAGTTTTCGATGGGATCCTCACTTACCATAACATTACTGCCTTTGCATGAAATACATGCAAGTGTGGTTATATAGACATCATTTATGGATATGTTTCTCATAGGTGATACAAACAAGACATTCTCATACCTAAAGGACAGAATAGGTGGATTGTCAATGGCTCCCCAAACGACATATATGACCATTGTATTTACTGCCACGCAGTTgccattttaaatgaatgcgGTGGAAACTTTAATCATGTGACCGTTCAATTTAACGTAATGGCAGCAGCCTTTAACCAGTTGTTGATGCACAGACTGTATGAGTGAAGCCGAAACATCTGgatcgccccctggtggctgactctagtataggtcataaattccccccccctcctccatgtTTAATGGGAAATGGGTAAgggccaagggggtaagcgtcgcttcagaactcaaacctcctatggcaccattttgatgcGACAAAAACGATTACCCgacgttagcattccattgactgccattcgttttgacgtcactttgacagcgattaactttacatctgaagcgtttaaagactttattagtccattgtttatttctaaagaaacataacgatgtataaaaggctccattaccttgtatctcacgttacgGCTCTGTAGCAgaatttttataaaaataggctaacgattgtgtcataaccacgcgacttactgtcgcatagtagaggaattaccgtattttacaggagaagctcgcaggcagtttcgacttacattagctgtttaagtttaattactaatgttaactagcattttagttagcaataattagcctgtgtccatgttatctccttacatatatctacgctctccgtctctgcaagattgggaatgattgagatttctcttggcacagctaccagaagacttacaactttcagacaggttgctcacgtcacatttacgttgtctctgtcagttggaggctgcgcagtaacactctgccctcaccggaaaagtgcttctaatatccttcactggtctccgtccagagcaacgggatctgttggtccattttatataatGTCTATGGTAAGGGCAGACTAAAAAATGTaagtacatgtcaaataatTCTTTAAGAGTACATTTTTCTGACAAGTTTGGTTTTAATTAGTTACTTAATGCTGTAAAAATATGGGAAgaaacgtcatgattgacagctgttaTTAACTCGTGATTGGTCGGGAGGTTGTATGGGCGGGACTTCGATATTGCTGCTCCACTCCCAATCACTACTGCGCAGACTCTTGCTCCAAACTTCCAAGATGGCAGCCAAATCTgagatattttggcttcacttttgtacagtgggaggaagtggagacgcgTCGTCCATCTTCATATACAATCTATGCTTTAAACACATAGTAAACATTGTGAAATGGAACTAGTTAAGTTTgggcaacaaaaatacttaaatAGGATAAGTACAACATCAGTGATTGGCTTAAATTGAGTCACGTAAAAATACTAAAATGAGGACGTAACATGATGTCACAGATGTTGATGCATCACGGACTAAAGTCCTTAAAACTTGGTTAAATTCAAAAAGTGAtagttgacttttggtttcacacgagACACAAACCCTGGATTCctaaaagtcctgtttgtttgaacAGTATCATATTTTAGCCCAGGCAGACACAGACCTCCCTGGTAAGCAGGTGGAGGCGCTGCAGGGTAGAAGACCGGCTGAGGGTACATCCCTGGCTGCTGCACGGCACCCCCGTAGTTCATAGGTGGCCCAGGATATGGTGGAGCCGAATCCTCTGCTGGGTatcctttttccatcttcagaAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208356 lncRNA upstream 77233 10709368 ~ 10709629 (+) True G153799
TU208291 lncRNA upstream 148383 10609591 ~ 10638479 (+) True G153746
TU208283 lncRNA upstream 183898 10602417 ~ 10602964 (+) True G153740
TU208227 lncRNA upstream 387509 10399125 ~ 10399353 (+) True G153684
TU208163 lncRNA upstream 550923 10169942 ~ 10235939 (+) True G153640
TU208497 lncRNA downstream 113547 10931719 ~ 10932529 (+) True G153875
TU208521 lncRNA downstream 149458 10967630 ~ 10969844 (+) True G153892
TU208494 lncRNA downstream 155163 10973335 ~ 11009050 (+) True G153872
TU208554 lncRNA downstream 260283 11078455 ~ 11079680 (+) True G153915
TU208555 lncRNA downstream 261580 11079752 ~ 11080658 (+) True G153916
XM_039825339.1 mRNA upstream 154227 10628446 ~ 10632635 (+) True wfikkn2a
XM_039825338.1 mRNA upstream 162322 10618653 ~ 10624540 (+) True ankrd40
XM_039824437.1 mRNA upstream 211685 10418021 ~ 10575177 (+) False cacna1ia
XM_039824731.1 mRNA downstream 8331 10826503 ~ 10828557 (+) True LOC120574456
XM_039824734.1 mRNA downstream 11161 10829333 ~ 10832063 (+) True LOC120574457
XM_039825944.1 mRNA downstream 27572 10845744 ~ 10854576 (+) True LOC120575243
XM_039825942.1 mRNA downstream 27574 10845746 ~ 10854576 (+) False LOC120575243
XM_039825943.1 mRNA downstream 27577 10845749 ~ 10854576 (+) False LOC120575243
TU208368 other upstream 33964 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 445239 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 720120 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 812289 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 848258 9938019 ~ 9938604 (+) True LOC120574658
XR_005641865.1 other downstream 246250 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 1267689 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 2025251 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 2198814 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 2950847 13769019 ~ 13778623 (+) False LOC120573994

Expression Profile