RNA id: TU209272


Basic Information

Item Value
RNA id TU209272
length 1319
lncRNA type read_through
GC content 0.49
exon number 4
gene id G154447
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12782774 ~ 12827577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGGGTGTTCGCCTGATGTCATTTGGCAGAAAGGGAGGCTGAGCTAACGGTGGGCACACGAGTGGAAAGCATAACAATAACGTTACCGCTTTACCGTCCACATCGGGACTTAACGTCTATTTTGGATTTAAATACGCAGCGTTAAATACCGACTCCTCACCGTGGTCCAAAGAAGAAGACGAGGTAAAGCTAACGGTCTGAAAGTACCAGATGCTATTCCAGCGCAGAGGGAGAACTGGCTCGAATAAGCAAGAGAGGGTGATGGGTTCCCGTTTTCCTGacggctagctaacgttaacgttagacCTTCGTTGGAAACACGGATACTGCGAAGTGAGGGGGACTTGCTTTGCTTCTTCTCCACCTCCGTCTATGTGACATTGTGCCTGAAATGCTAGCGCGGTCTCAGCCGTCGAGCAGCCTCTGGGCCGCAGCTCGGCACACCGAGCCCGAATCTGGGAAATAGCTAGCTTGCTTGCTGCAGCTGTACCAGATGCTGCTgttgcggctgctgctgctaaacGGATCCGAAGGACAACAAAAACAGTTCAGGGCCCCGGCGCTGAGTGAGCTATCGTTTTACCTTACTGGACTACAACGGGTATTTGCGATGTGATGCTTTTGTGCGTCGTTTTTGAGCCTTGTGTAGCTGGAGGCTCTTGCTTGCTTGACGCGAAGGAGCTAACGTTGCTGCAAAATGCACAGCAGAACCACAGCAGCAGGCTCCTGTTGAAGGGGGCGAGGTTTGACTGATAACAGATAACAACCCACCCTGAATCTCCTAACACTCGGTTCACATTTGGACTACGACCACCACATTTTTCCACGTCATTCACCGCTTCATAAGCTGGCGATATGGATAAACTAACGATCATTTCAGGGTGCCTGTTTCTGGCAGCAGATATCTTTGCAATAGCCAGCATTGCAAACCCAGACTGGATCAACACTGGTGAATCAGCAGGTTGCTTTTCAGCATGACACTGTGTGAAAAAGGATGGATCCTTTACCCCAAAAAACCTTCCACCCACATGGGACTGAGGCCCCGTCACCCAGTGTGAATAAACTACAGAACCAGAGGAAAGCAGACGACCAGGAGCAACTGATCCAGCATCAGTTTTTCAACTCATTATGAGTCAAAGTCAAAGTGCACTGTGGTCTTTGGACCAGGACTGAAGATCAAGATCCTTGATTTTCTACAGTAGTATTCTTTTCTCCCAAAGGGCAGATTTGTAACTTCCAGGATGTTGTGATGTTAAAACACATCTCAGTCCTGAAGAAGCAACTGTCCACCATAGGTCAAAACAGCTATTATTGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209223 lncRNA upstream 47862 12734683 ~ 12734912 (+) True G154410
TU209192 lncRNA upstream 213922 12566974 ~ 12568852 (+) True G154385
TU209182 lncRNA upstream 259102 12475767 ~ 12523672 (+) True G154379
TU209160 lncRNA upstream 380791 12401730 ~ 12401983 (+) True G154367
TU209139 lncRNA upstream 440424 12341419 ~ 12342350 (+) False LOC120574756
XR_005641886.1 lncRNA downstream 61842 12889419 ~ 12904818 (+) True LOC120574706
TU209328 lncRNA downstream 152676 12980253 ~ 12981635 (+) True G154494
XR_005641888.1 lncRNA downstream 164326 12991903 ~ 12995560 (+) True LOC120574709
TU209410 lncRNA downstream 200555 13028132 ~ 13034382 (+) True G154535
TU209430 lncRNA downstream 289817 13117394 ~ 13117721 (+) True G154555
XM_039824235.1 mRNA upstream 1329 12774893 ~ 12781445 (+) True LOC120574126
XM_039825718.1 mRNA upstream 8634 12766625 ~ 12774140 (+) True si:ch211-256e16.3
XM_039825719.1 mRNA upstream 8634 12766657 ~ 12774140 (+) False si:ch211-256e16.3
XM_039823972.1 mRNA upstream 17112 12761621 ~ 12765662 (+) True anks4b
XM_039823966.1 mRNA upstream 29414 12749211 ~ 12753360 (+) False dxo
XM_039824238.1 mRNA downstream 2230 12829807 ~ 12841344 (+) True sdr42e2
XM_039825987.1 mRNA downstream 26452 12854029 ~ 12859158 (+) True mfsd13al
XM_039825365.1 mRNA downstream 37358 12864935 ~ 12872915 (+) True LOC120574877
XM_039825068.1 mRNA downstream 95793 12923370 ~ 12931320 (+) True proza
XM_039825069.1 mRNA downstream 111107 12938684 ~ 12952238 (+) True gprc5ba
TU209004 other upstream 667582 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 1708948 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2029876 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 2441151 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 2716032 10065460 ~ 10066742 (+) True G153433
TU209291 other downstream 15846 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 189409 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 941442 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 941442 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 941442 13769019 ~ 13775553 (+) False LOC120573994

Expression Profile