RNA id: TU209291


Basic Information

Item Value
RNA id TU209291
length 543
RNA type TUCP
GC content 0.53
exon number 3
gene id G154461
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12843423 ~ 12846597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACATTACTCTCACCACCTCCCATAAATTTGTCAGAGCATTTTATGTAGCGTACCCCTCAAATGCCCTTATTGGAGAAGGATCTGTGAAGATCTCCTTGAAGAGAGCCTTGTATTCGGGCTGCTGGCTGTCTTCAAGACCCACTGTCAGATTAGACAGAGCGGCTGAGGACCGGCGGCGGTTCCGGCTGCACCCAAAGGGACTGTTGGATGTCTGGACGTCTTTATGGCTGGGCCCGTCTGCCTGCTGGCACCGCCGCAGCAGCTCATCATATTTCACCTGCAGTGCGCTGTACTGTGCGTCCACCTCGTTGAGCAGAGAGATGCCCCTCTGTTTCACCGCTTCCGTTCGCCTTATGCACAACTGCTCGTGACCACGCCGAATCTCATCTGGGTCCGTCGCTCTCAAAATGCTGTCACTGTTACACCTCTGCCAGATGTATCTTCTCTGCTCCTCATCCTTTCCTACCTTCTCCTCCATCTCATCCTGCCCCGGTCTTTCTTCTGAGGCAAATAATACTGTTTCAGGCAACTGCAGCTGATC

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209272 lncRNA upstream 15846 12782774 ~ 12827577 (+) False G154447
TU209270 lncRNA upstream 35604 12782774 ~ 12807819 (+) True G154447
TU209223 lncRNA upstream 108511 12734683 ~ 12734912 (+) True G154410
TU209192 lncRNA upstream 274571 12566974 ~ 12568852 (+) True G154385
TU209182 lncRNA upstream 319751 12475767 ~ 12523672 (+) True G154379
XR_005641886.1 lncRNA downstream 42822 12889419 ~ 12904818 (+) True LOC120574706
TU209328 lncRNA downstream 133656 12980253 ~ 12981635 (+) True G154494
XR_005641888.1 lncRNA downstream 145306 12991903 ~ 12995560 (+) True LOC120574709
TU209410 lncRNA downstream 181535 13028132 ~ 13034382 (+) True G154535
TU209430 lncRNA downstream 270797 13117394 ~ 13117721 (+) True G154555
XM_039824237.1 mRNA upstream 2078 12817115 ~ 12841345 (+) False sdr42e2
XM_039824238.1 mRNA upstream 2079 12829807 ~ 12841344 (+) True sdr42e2
XM_039824239.1 mRNA upstream 35527 12782750 ~ 12807896 (+) True mosmoa
XM_039824235.1 mRNA upstream 61978 12774893 ~ 12781445 (+) True LOC120574126
XM_039825718.1 mRNA upstream 69283 12766625 ~ 12774140 (+) True si:ch211-256e16.3
XM_039825987.1 mRNA downstream 7432 12854029 ~ 12859158 (+) True mfsd13al
XM_039825365.1 mRNA downstream 18338 12864935 ~ 12872915 (+) True LOC120574877
XM_039825068.1 mRNA downstream 76773 12923370 ~ 12931320 (+) True proza
XM_039825069.1 mRNA downstream 92087 12938684 ~ 12952238 (+) True gprc5ba
XM_039825070.1 mRNA downstream 92088 12938685 ~ 12952238 (+) False gprc5ba
TU209004 other upstream 728231 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 1769597 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2090525 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 2501800 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 2776681 10065460 ~ 10066742 (+) True G153433
TU209346 other downstream 170389 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 922422 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 922422 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 922422 13769019 ~ 13775553 (+) False LOC120573994
unassigned_transcript_849 other downstream 923106 13769703 ~ 13769776 (+) True trnat-agu_6

Expression Profile