RNA id: XM_039825503.1


Basic Information

Item Value
RNA id XM_039825503.1
length 3883
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC120574968
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13016959 ~ 13026416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCCCGGAAGAGTTgaaactgatgatgatgatggccaACCCGAGATTGAAGGAGAAACACAAGGTTCATATTATAGCCGCACTTTTTTGTTCCCCTGCGACATTTGTGCGTGTCTAACCCGTcgagagaaaggaaaggagatatCACTTCCCCCCATTTGAAGCTGGGTGACGAGGCTACATGGTGTGTGTTTCCTATTCAGAGTGTGGATGTGTGGGTGTCCAGAGATGGAGAGCTATGAGGACTTCTGTCTGCGGAGTTTGGCCATACTGCAGGAGGAGGGGAAATTCAAGAAGACGACATTTGAGCCACTGTGGTCCCTGAAGGCTCTCTCCGTTATCCGCTTCCATGGAAGAGCTGTGCTTTCGCCTCTGTTGAGTGCAGAGCAGCGCATTGAGATGTGTGACTACAGGCGGAGAGCGGTCCAGCTGGAGGTGGACAGACAGAACCAGCAGAATAACAACCTTTTGGCTCGGGTTCAGGACATGCTGGACCAAGCTCAGGCACATACAGTACCAAGGGAAGATGTTGAAAAGATGCCAGTTTCTAAATCTGCAACAGTCAGTGGCTACACCCTGGTAATTGACTCTCCTGGACTTCCCAGAATCCCTGGATTTGGGATTCAGACAAATGATGAGCCTGCCACTACGTGCTCTGAGACCCCCATCCTCAATGGCTGCAAGGCAGTGGAGGATGTGGTGGTGGAGAGGGAAGAGAAgagtgaggaggaagaggaggaggaggaggaggaggaggaggaggaggaggaggacattaGTTTGGACAGTCTTCTTAAGAGATCAAGGGAATATGTGAAGAGAGAGCAGATTCAGCAGGGGTCAAAAATGATCCACACAGCCACCAGGAATCCACCGCCGGAGACGGTCTCTGACAAGGAGAATAAGAGCTGCAGTCCCATGGGGGACACGGGCGTTGAGTTTGGGTTCAGTCTGCACCATAGCCCTATTGGCCAACCTCAGACCCAAATCCAGCATCAGACTCTCTACGACCACAGTCCCCAACAGTCTGGATGCCTCTCACCTAGTCTACCTGACCGGTTTGCTCGTCTCCCCAGTCCAGAGTCCAGCATTAGTCCCCGTGCACAGAGACGCAGACCCCGCCCATTTTCTACAGGAAATATCCATATTTCATTTCCCATCGGCCCAGCAGACCTTATTCCCCGAAGCCCAAGAAGGTCAGGGGAAGGTTCTGGCATGGGAGATTGGGGAGAGGCTCTCTCAGGGGCTGTAAAGTCCCCCGATCACTGGGGCTCAGCGGGAAGTGACAGTGGTGGTGGTGCTAGCAGGAGCGGCGATCGGCGATCCAGCCACTGTGGTACCAGTCCAGTGCAGGAGACCTGTAGCCCCGGTAGTGCCTCAGGGCTTAGCCCGAAGGGACACCATGACCATCTGGCTGCAGGATTTCGCCGGCGCTGCCACACCCTGGACAGCCAGCTGCATAGCTACCACTCTGGAGTTGAGCACATAGACCGCAGCCAGGAAAGGGTTCCTCGCTTCATGGCAGGAGTCACATGGAAGGCTCCAAGTTGGCGCACCCCTGCAGCCCCCTTAAACCAGTCGTATGAGGTAGATATTCCCTCACCATCTCTGCTGAGGCCCCGCATGTCTCCTGACACGGCTCAGGTCACACTCAAGATGGAGCCTGACGACACTCAAGGGACAAACAATGGACGGATCACACCAACTGTCCTGTCCAGAAATGCAGCTGAGGCACAGGCCAGCAAGACGGAGGAGACCCAGAGGCGAGCACAGGCTCTGGAGGACATGCAGAGGCGTCTGGAGGAGGAGCATGTCTTGCAGATGTCTCTGCTCCTGGCTGAGCAGGAGAAAGAGCAACATCGCCTCCGTCTGgagctggaggagacagagagaagactgAGGGAGCAGGAGGGTGTGCGGCCTTTGAGTGGGGATGTGTGTGGGTGGAATTGTAGGTCTGTGAGTGACAGCCGTCCTGTTGTGAGCCCCTCCTGCCCGGGACTAAGCCCTGCCCACACGCCATCTGAGCGATCACCTGGACACAGTAAAGGTTTCCCCAGTCCTGAAAGTTCCAGTGTATCTTCTCCCTCTGTCCAGCCTCCCGTCTATCTGTGGGGGCCCACATGGGCAGTTAGCAAACCTCGAGCAAGGCTAAGTCTGGTTCTGACATCAGAGCAGCAGAGAGCGTTCTGTCGAATCGGCGCAATCATTCGAGGTTTCCTTACTCGCAGACTGCTCAAAACAGAGAAGGTCAGACACCTGCGCCAGACCATCACGGATACACAGGAATTCATCCGTTCATTCCAGACTGAAGCTCCACAGAAGAGAGGCCTCTGCTCAGCAGAAGATCGCTCCCTGCAGGGCAGAGTTAGAgcccagTTACGTGCAGCCCTTTATGACATCCATGACATCTTCTTTGAAATGCCTCTGGGGGGTCGATTAGCATTGCTGCAGCAGGAAAGGGAGCTCCGAGCAGAGAGGAAGCTACGAGAAATGGAGAAAGCCAAGTGCCCCAAGGAGAGAGTGGTTCTGTCTGCCGCCACACAAAGGTCTCTGGACAGGAAAAAGAGGGTTGGTCAATCCCCAGCACAGGGTAGGAAGATGCAGCAGAAGCCAAAGAGCCCCACTACCAACAGAGTCCTGAAGCCAAGCCAAGGCCAACATTCTCCTGTCCCAGGCCAGCTGAACCGCCAGGGGAGCTGGTACAGAAAGACGCCAGAGGAGAGAGTGAGGCGCTCAGACAGCCTGAAGAAGCAGCACTCCCTGGGTTAACAGGTGACTCAACATCCCCTGACCTGTGAACTTGATTTTTTTAGTCTTTGAATACAAACGTCACACCACTGAAACTCCAGTCAGCGCTGCTATTATGATTGTCTGAAATTCAAATGATTGTATTCACTACCACACTTTAGCTCATTGATATACACCATCACAATGCCATTGCTTTTGACTGTTGTAGCTTGCTGAAATGTTTAAGTGGCTACAACTGATTGTTATCCGCAAAACTCTCATGTAGCTTGATACTGTGTGTGGAGTATTGGATGATAAGATAggcacattttacattttaaagaaaaaaacaagcttCTGTACTTAAATGAAAGCTAGAAGGTTAGAGTtgaaaggaaataaaaacatgtttatccGTGCCTAAGAATTATGCCTTTGCTATCTGTAACATTTAAGCATGCATACATTTACCAATTGTGTTCATAAACATTTAGTGCTTATAGCTGTAAGAGAATTTACAAACATCCGTTTCATGGTCACATTCACATAATGTAGTTTCCATATTTAAGTATTTAAGTGAAAATAGTtcattaattatatttttttgattACCTTtgctttgtttctttattaaaTGGTGCTGAGTTTACAATATTCTGAGACATTTCAGTGTGTTTCAACAATTGGCTTAAATCAATGccaaatcaattttttttttttaaatgtccttgTTTACACACGCTGTTATAATGTAGCTTTACATAACAGGAGATGTATAGCAGACACTCAGTGTGGAGTTTCCTCTGGAAAACTACTGagaacatttttattattaagacCATGTTACAGTAAATGCTTGCCAAATTCTCTAAGGTTTTCTCTTATTGTCCACTGGCCATGTCAAAGAATAAAGGGACAGACTGAATTAAAGAATATTAATGTGAACATATTCTCACCTCATGTAAAGGAATTGGTACATCCACTTGTTCACTGCGATACCACATTGACTTTATACTTCTGTGCAGTAGTATTCAGTGTCTGGATGTTGTTTGCTAACATTGTTGTACGGtctcttaaattttttttttatttatttaaaatgccaAATTGTCATGTTTTCTATGACCAGAATAAATTCTGAAATTATCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641888.1 lncRNA upstream 21399 12991903 ~ 12995560 (+) True LOC120574709
TU209328 lncRNA upstream 35324 12980253 ~ 12981635 (+) True G154494
XR_005641886.1 lncRNA upstream 112141 12889419 ~ 12904818 (+) True LOC120574706
TU209272 lncRNA upstream 189382 12782774 ~ 12827577 (+) False G154447
TU209270 lncRNA upstream 209140 12782774 ~ 12807819 (+) True G154447
TU209410 lncRNA downstream 1716 13028132 ~ 13034382 (+) True G154535
TU209430 lncRNA downstream 90978 13117394 ~ 13117721 (+) True G154555
TU209465 lncRNA downstream 207697 13234113 ~ 13234321 (+) True G154586
TU209512 lncRNA downstream 242503 13268919 ~ 13269290 (+) True G154602
TU209514 lncRNA downstream 329807 13356223 ~ 13405694 (+) False G154603
XM_039825069.1 mRNA upstream 64721 12938684 ~ 12952238 (+) True gprc5ba
XM_039825070.1 mRNA upstream 64721 12938685 ~ 12952238 (+) False gprc5ba
XM_039825068.1 mRNA upstream 85639 12923370 ~ 12931320 (+) True proza
XM_039825365.1 mRNA upstream 144044 12864935 ~ 12872915 (+) True LOC120574877
XM_039825987.1 mRNA upstream 157801 12854029 ~ 12859158 (+) True mfsd13al
XM_039825670.1 mRNA downstream 397129 13423545 ~ 13448411 (+) False LOC120575071
XM_039825669.1 mRNA downstream 397159 13423575 ~ 13448411 (+) True LOC120575071
XM_039824663.1 mRNA downstream 422211 13448627 ~ 13454217 (+) True LOC120574400
XM_039824664.1 mRNA downstream 428076 13454492 ~ 13460827 (+) True LOC120574401
XM_039825277.1 mRNA downstream 576412 13602828 ~ 13631755 (+) True glis2b
TU209291 other upstream 170362 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 901767 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 1943133 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2264061 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 2675336 10250377 ~ 10341623 (+) True G153646
XR_005641807.1 other downstream 742603 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 742603 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 742603 13769019 ~ 13775553 (+) False LOC120573994
unassigned_transcript_849 other downstream 743287 13769703 ~ 13769776 (+) True trnat-agu_6
TU209660 other downstream 748285 13774701 ~ 13781685 (+) True LOC120573994

Expression Profile