RNA id: XM_039825273.1


Basic Information

Item Value
RNA id XM_039825273.1
length 4421
RNA type mRNA
GC content 0.46
exon number 3
gene id vasnb
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13656015 ~ 13692303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCTCACCACCAATAAAGCGCTTTTTGTCCAGGCAGTCAGCACGAGCATTCCTTGACGTGGAGGTCGGTGTATCTCTCCAAGGATTTGATGAAGACCGTTCTTTCGAAGTTTAGTACGTTCACAGAAACTTTTTGTAAAGGCGCGCGCACACGGGAAAAACAAGATTGTATCGGTGAACTGCTCCGCTTGGATAAAGGAACAAGCGCGGCTGCGCTCACAACTTTACTTCTTCGAAGTTCAGGGAAAAGAAGACCTTTAACCAAGAAAAGTGGAGCGAGAATAGAGGAGGAAGTTTCTTCACTGGGCTGAGCATGGAGAGACAAAGAGTCTCCACCATGAAGGTCTTTCTCACTCCGCTGATGCCCTTTCTACTCTTCCTCATCCTTCCTTATGGCACCTTGTCCAGCGAGTGCCCAGAGGACTGCGCCTGTTCCACGCCAGAATCCATCTTATGTTTCCTGAGACGCTCCTCTACTATCCCCAAGGGAGTGCCCCCATCCACAAAAAGTCTCTACCTCTTTGCCAACGGCATTGAGGGCTTGACAACTGAGGACTTTGATGGTCTGGAGAACCTGGAGATGCTGGACCTCAGTCAAAACAAATTGACAGAACTTATTGATAGGGTGTTTGAACCTTTGACCTCTTTGAGAAACCTGGACTTGTCATCCAACCAGATCACCCACATTTCAGAGGAATGCTTCCAGGGTATGGCACTGCTTGAgcgcctttatttgtatagtaaTCATATCGAGACCATCCACCCTGCAGCCTTTAATGGCTTAGAGCACTTGCTGGAACTCAAACTGCAGGGCAACCAGTTGACATCCCTGCCTGCTCTCTCAATGCCCCGACTACTGCTGCTGGACCTTCGCTTTAATGTCTTACCCACCTTGGGTCCTTCAGACCTCCAGACCCCAAACCTGGAGTCGCTCAAATTGGGTGGTGTGGGGCTCTCCAACCTGAATAAGGAGCTTATGGGTAGTCTAAAGAACCTCCATGAACTGGACATCTCAGGAAACCAACTCGAGTCTTTCCCCTCAGCGCTAATGGAGACCCAGGGGCTGATTCACCTCAGCCTGGCTGGAAACCCGATGGGTCCTCTTAAGGTTCAGGACCTGCAGAACCTTGGAGAGCTGCAGGAGTTGGACATTAGTAGCCTCAGTTTGCAGGGCCTCCCTGAAGAGTTTTCCCAGCTCTTACCCCACCTCAGAAAGCTCACAGTAGCAGAGAACCCATTCAACTGTCTCTGTACATTAGCATGGTTCCCAAGATGGCTGAGAGCCCAGAGCATCACCCTGGAGAGAACAGAGGAGACCCGCTGCCATTTCCCACCTATCAATGCTGGAAAGGTAATGGAAAGACTGGAGCACAGGGATTTTGGCTGTCCTACTACAACTACAGTCACCACTAGTACTGTCAAAACTACTACTACCCTGCCTGTTCCTGTCACCACCCTCCCGAGTACTACTAGAGCTATTCCAGTCCCCAGGGCCAGTGACGACCCCACTAACAAAGAGAATACATTTCCCCTACCCCCTGTCCCCGCATCCCCCAGTAGCAGCAGCATGGACCCAGATGGGGAGCAGCATTTCTGTCCCCCTAACACCTGTGTGAATGGGGGTACTTGTCGTTTGGACCAGCATGGTCAGGTAGAATGTACCTGTCCACATGGCACCTCTGGCATGTATTGTGAAGTCCAAAACCATCACCCACCTTCACCACCTGAAGCTGACATCCCCATGGCAACGGTCAGTGTAGATGCACCAGACATCAGCTCACATCAAGCAACCACAACCTCAGTCCTGCTGGACCTCCACCGCTACATTGAAATGCGGCCTTACATCCGTGGAATCCGCCTGACCTACCGCAATCTCTCTGGGCCAGACCGCAGGCCGATTCAACTCAGCCTGCCATCATCCTTCCCAGAGTACAGACTCAGAGGTCTGAAGCCCAACTCCACCTACACTGTGTGTGCCAGTCCACTAGGTGCCCCTAGTGGCACAGACAGGGTCTGTACTGAGGCCCATACGGCTGCTGAAAGCGTCAGGGGCCATGATGCACAATTTGACAACCAGAGGCTGACCACGATGCTGGTACCTGCAATTGCCATTTTGCTACTGCTGGTACTGATAGCAATAGCAGTGGGAGTGGTATGCTATCTTCGCAGGAAGAGGGCCAATGGCCACCTGGACCTAGACTGTGAGCCCTCCCAGCTAGAGTTGGATGGAGTGAAGGCTGATATGGACAATGGGGCACTGCCTCAAAAACAGCCACAACTTATGGTCCCTGAACCTGTTGTTCAGAATGGCAATCTGGAATATGAGGTGTTGCTACTACAGGATCACTGTACATCAAATAACAATATGACTTCACACAAGCCTTCCTACTTTTGACACCTTTGATTACACAGACCCAAATGAGGATTTTAACTATTCAGCTCTGTTTTCCCCACTGTTGAAAGAGCAGCACAACAGCAAATGCTGTTGTGAAAGTGGAGGACACAGTATCAACCAGCCAACAAGCGAAGGAGAAACTGGACATATATTTAACTAAAGGCCCCTTGGTTGTCGAAGTAGACATTAAACAAGTTCAAAAACATGGGCCTGGACTTTAAAAAGCATTGAAAGTGCCTCTACTCCATTTACATGCTGTATCCTGCTTCAATAATATTTCTTCATTCACATTGCTGGAATGGCAACCTCTCAGCTCACATGAGTCGATGCTGGGACTGATGGTGTGTTGTCATTGGCTGAAACCTAGGGCTAAGGGACATACGGACCTCAAGCCCTCCTTTATCTGTTCATAAAGGAGAGTGCACTGAAATGGGTTGTGCTGCCCTTTCCCCATCACAACAGCCCAACTAAACACTATCAGCAATTGTTTTTGCTGCATGTTGTAACTCCTCAGTACTACCCCAAAAGGGATCAGTGCTTGCCGTGAATGACCTTTAAGACACCAAATGAAGTTGTGCAGAGAAAAACGCTTCATGCTTGTATTGCTTTATTTGGCtctaaaaacactttttttgtatgtttttttttcttttttttttatacctgtGTCTTTATGTTAATTTGTATTGTGCAACATTGTGACTGTTAACAGCCCTTTATACCCTCCACCCCCACCTCTTGTGACTAACAGACAAAACAGCAGATTAAAATCTTTGAAGATTAAAATTCGTTTGGTACCAGCAAAGTCAATCAAAGGGCTTTGCCCCCAGAATGTCAGACAGTCTAAGTAGATGTGAGTCTGGACAGGCTCAAGACTAAATCCCCCTTCTCCTACTGAAGCCCTCAGCCTGCTTTGCCATCACAAAGGAAGAAGGTAAGCAGGATTACAAAAAGGTACTGTACAGAGAGAAACAGTTGACTGAACCACTTCTGTTTCAGTGCTGCACTGAGTTTCAACCAGTGTAGAGCTTGACTTAATTACAGTAAGCACACACATGACTATACTAAAGCAAAAGAGGACTTCAGagacattatttattatttatattcccTGGAAGGGAAACTCAATTTTATCCCTCAACTACAATTCACATACAACATACTACTTGGCCAGGCCCACAACAAGCAAAGCAAATAGtggttgtgtattgtgtttccCTTGAGTAAAAATAGCCTGCTTGGCGTAATGTTGTGCACAATTTCTCCTTGGCATGAAGGGTCCCAGTTTTGCTCACTTGCACCTAACCAGACTATGGTAAAGCCAGATGCACAAGAGAAGCACACTCGATAGtgtttatattgttttgttgGACAACGTGATGAGATCCAAATCTGTGAATTTAGGGCAAAGAAGGACTCAAAGTagccatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatgtgtgttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgtagctCTGTCAACTTCAGTTATAATGCAAGTATGTGTTCTGTCTTGTGCAAAGACCTGCAGACATCAAGCTACTATCAGTAACTCCCTCTATCTGGCTGCATGGAGTACATTAAGTCCCAAACAACACTACCTTTAGGCAAACACACCAAAGACACAAATGtgaatgtctgtaatgttaccTACCTACAGTATTCCCAGCACACAATTAACAGTTCCCTGCTGACAAGATGCCTCGAGAACCCAAACAAACAATCAAGCAATTTAACTGGAATTATTGTCTGTAAAATAGAATACATTGAAGATAGCCAAAAGTATTTTCGATGTGATTGTTAATTTTTCCCTGTTTATTTTGGGAAGCTCTTTGTTgtcattcattgttttttttaattctgtaaacattatttgtgaaaaaaagtgatgttaTCATTAAATGAATA

Function

GO: NA

KEGG:

id description
K24500 VASN; vasorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209616 lncRNA upstream 73775 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 172548 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 181691 13484039 ~ 13484718 (+) True G154639
TU209551 lncRNA upstream 190961 13474159 ~ 13475448 (+) True G154634
TU209515 lncRNA upstream 287194 13356223 ~ 13379215 (+) True G154603
XR_005641994.1 lncRNA downstream 254303 13946606 ~ 13954723 (+) True LOC120575454
TU209761 lncRNA downstream 357528 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 357789 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 415478 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 415523 14107826 ~ 14241105 (+) False LOC120575155
XM_039825277.1 mRNA upstream 34654 13602828 ~ 13631755 (+) True glis2b
XM_039825278.1 mRNA upstream 34654 13623713 ~ 13631755 (+) False glis2b
XM_039824664.1 mRNA upstream 205582 13454492 ~ 13460827 (+) True LOC120574401
XM_039824663.1 mRNA upstream 212192 13448627 ~ 13454217 (+) True LOC120574400
XM_039825670.1 mRNA upstream 217998 13423545 ~ 13448411 (+) False LOC120575071
XM_039825274.1 mRNA downstream 56617 13748920 ~ 13754367 (+) True dnaja3a
XM_039825275.1 mRNA downstream 56626 13748929 ~ 13754366 (+) False dnaja3a
XM_039823954.1 mRNA downstream 76716 13769019 ~ 13777259 (+) False LOC120573994
XM_039823955.1 mRNA downstream 76719 13769022 ~ 13778712 (+) False LOC120573994
XM_039823956.1 mRNA downstream 76720 13769023 ~ 13775730 (+) False LOC120573994
TU209346 other upstream 645741 13016986 ~ 13020668 (+) False LOC120574968
TU209291 other upstream 819812 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 1551217 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 2592583 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2913511 10752160 ~ 10752898 (+) True G153808
XR_005641807.1 other downstream 76716 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 76716 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 76716 13769019 ~ 13775553 (+) False LOC120573994
unassigned_transcript_849 other downstream 77400 13769703 ~ 13769776 (+) True trnat-agu_6
TU209660 other downstream 82398 13774701 ~ 13781685 (+) True LOC120573994

Expression Profile