RNA id: TU209660


Basic Information

Item Value
RNA id TU209660
length 3944
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC120573994
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13769019 ~ 13781685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tGTTACTGACTGTGACGTctaatatttacagtttttgtcgTTTTGTGTTCAGATAATCCAGTGGGTTTATGAATGGTTTATTTAGCTTTAGAGACTCCAGGAATGTTCTCAACCCATACAGGAACATTCAACCCTTCAATTTATCTGAAATATCACCAAATTTGGATTGGCATGGCTTTACGAATAATGAGATGCATTTACTACATGATATCGGCATGTGGCAAATAGATTTTACAGCCTGGATCACTGTAATTCCAGTTGGTCTTCTCAGAAATATTTCAATTTTAAGAGTgtaggtttttatttttctaatggTTCAATAATACTTccatgttttaaattatattttgattttgatttttgtTGTCTAATTGTACTGCATTAATACCAATTAATACCTAGAATAATGGAAAAATGTAACCCGAGGTCAGTAATGGAGCTCTTGCAACACTGAGTGTACCAGCAGATGGCACTCAACTCACAGGAGAAGGGACCATAGAACGCACAGTTAACGAATGTTAATCGCTTGTTTAGTTAATACTGGTTGCATCCAAAGCAATCAATCAATTGGCAGACAGATTCAATCCGTGACTAGAATTACATGTGGAAATACGACTACTTTTCATAAAATACTaacaagtatttttttaaattgacttaTCAGTGTGCTGATGCGACTGTTGGCCTGCTGGTCTGTGGATTTAAGTGATTTGAAAGGAACTATGGAGGGGCTTCATCCTATTTTAATCCTGTCTTTCATCGAAAGCAGCAGGGACCCCATGTCTTCAGGCTCATCCTCCATGTGTTCCAGTTTCTTCCTGGCAAATCAACGTTTCTGAAGAGCTCACATTGGGCCAGAGCTGATTGCGAACGTGATCCAAGAGGCCAACGCTGCAACCTGGCTTTGGGATTCATCAGCCCACACCATCAGGATGGGCTGTACTACGGGCCACCTGGCTTGCCAAACCCAGCCCCAGACCAACGCGGGGCGGGAGGGTCAGTCCCTGGAGGCTGGTGGTGCTAAAGTCCCTGACGTGCTCTCCTCTCTGGAGCGTCTGTCCCAGGCCACTGGAGGCATGGAGAAGTCCTGGTACCGCTGCATCTTTCCCTTTGGAATCATCTCTTTGGTGATCGGCGTCGCAGGAACTGGAGTGACCTACACCTATAATGACCTGCCTCAGACTAAAGTGGTGTCAGTGGTGCTACTCGTCATGGGTGTTTTGCTGTTGCTGATGGCCACCACCTGTTGGATTGTCcacaagaaaaagagaaggaaaaagaaagagggaggctCTTTCACCTCTGAGCAGTGTCCCTTATGAAGCACATGGGGAAAACAGTGGTAGGAACTTGAAAGCAGAGACATACCCCAGGCTGGGAGCTCAAGGGTTGGCTAAAGAAAAACGCCACTTCACCTCCTCCCAGCGCCAAATCCCCTCTATTCTTTCTCACAGAGTTTAGCTCAGCACATACCGGAGAGAACTTGAGCTGAGAAATCATAGAGAGTGGAAGGACAGATTGACAGGACACTAAGTATCTGTTTAGTCTGTAAAGTTTGGACCATTTTGGATTAGCAAGGAGGGATCACCAATGCCTCACGCTCTTTAATCATCAGACAGCAGGTGTCCAGTGTCAAAACAACCTCTGAGGAGACGCACACAAATATGCATTGCACACTACATGCATATTTACACGCACGGATACACTCACATATGCACAAGTAGTCGCAGTGGGAGCTCGCGCAGACACCTAACACGCTATGCAGAGCTGCTGCCGGAGTCAATGCTAGTGTCACTAAGCACGTCAGTCACAGCATTCCTCTTGCCACAGGTGACTCTCCAAGAGGCCAGAAGTGGGCCAAAGACGGCAACCTGATACCCAGCCGAAAGACCAGTGCACCCACGTCAGCGGCCGGCGTCATTCACTCGTCCTGTGACACCGCAGCAATGTGTTGGGGGGCTTTTTTTACGCAATGGGAGAGTGGAACTTGAGTCCAGCAGGATCTTACTGGCATCTGTGTGGACGATGAGCTTGGAGAGGGCAGAGGACCTGCTGGGGAAGTggaaggtgtttgtgtgtgatcaaATAAAGATTCTGGTTAAACGGAAAGACTGTTGGACCTTGGGCTTCACAACTAAGGAACAAAAGATTTGCATATATAGCCATGTCCACACCAAGCAAGAGAAACATTGAGTAAAGCAACATACTCTGAAAGGCCTTCTGTAGCTTCAGCTACATATTAAAAAGGATAGGggcactgactgactgattgcCCTCCTGTCAATGTGCGAGCATTTACGCCAAGCTTAGTGTCTTCGTGGGGCACCTCAACCCCACACAGGGCAGGCCAGGATTATTGAAGGACACTACCCGAGGGGACATGCCACTGAAGGGACACTTTGACTGATCCTGCTCCCCCAGGGCCCCTCCCTCTTGGTGCCTTAAGCAAGCACTCATGGAAAAAGGCTCTATCGCATTCCCCCGTTTCCATCTGAACCCCTGAGAATTCCCCCCCCCCTagttctttctctgtctttttcccaAAATGACTCCTCCTGCATCCCATATTTCTCCATCCTACATCCCCAGTTTAGTTTCTGACTTGATCCAACTCATTTCTCCATTGTCATATAGCCCAGGAGCAAGTGTGTACAGCcttttgacattcaaattacaCACTTATATACTTTAACATAAACCCCATAGTCCACAGACATTTGTCTTCATTGTTCTGTGCCAAAGAAAATGGATTATTTTCTTTCATAGTGGAAAGAATATTGTCTGAAAATATGGTACAAGGCTGTTCTCTAGTGAATAATGATTCATTGTTGTTCTCTACGTGACTCTTGGGTTTCCCTTTCATATAATGTTTCTTGTAGAGAGAATGGGTGAATGTTACTGCACTCAACTCTGTGAATAGGTGTTTTCTGTTGGCGCGGGTTTACAGGATGAGTCACATAATggcattttattcttgtcttaaATATTCTCTCGTTTCTGTCACTGAATGTAAAGTGGGATGGAAAATGCAAATCCTAGAAGTAGTAAGTGCAACATGCATAATGTATAGAAATTGGGTATAGCCTGTTTCTCCCCGTGTGAAGAACTGTGTACAAGCACTCCTTTTCCCTTGAGAACTGTCATTGATCACTGTTGCATCGATTCTGGCCACCAGATTACTGACGCTCATGCTGAGTAAAGTCTGTCTATGCATCCAGAGGTAGCAGTTAACACACAATGCCAAAGACCGTCCTGGAGGCCAGCTGCTTCAATAGACATGCAATTGATCAGTCCTTTCTGACACATTTGTTTGCGTCTCAGTGTGCCATTTAGATGTACAGTTGCATACTGATTATTAGTCAAACTCTGAAGGGGAATAAGGAGGTAATATtggaagacaaaaacagaatattGGAAGTCATTACTTTATGTGAGAGTGGGGAGCAGTCCCTGCAGTTGGATTGGGTTCAGCCACCCTGAACAGAACAGTATTATTCTTAGGGGATATAATGCATTACTGGCAGCAGCAGTGTAATTGCCAAGTTAACCCTGGAGCGTAAGTCTTCTCTGATCATTTTATGTACTGACAAAAAAATAGGATTAACAGATCAGTCTGTATTCGCAAGCACCTGCGTACTGCATGGCCACATCCCTTAATCTCTTTCAAGTCAAAGGAAATGCACATAAAGAGTATTCATGAGTATGTTCTTTTTTAGCTCAGTTGATGACAGGTGACCAGTATTTGTTTGTCAGAGATGTGAAGTGATTTCCCTCCTgccttttgaaaaataaaagggAAAGTCTACCTCTCTCTGCTGCTTGGGAAATACGTCCCTCACCCAGTAGACGGCCATGCTGTCTGCCAATGTAGTTTGTCACTCCAGCGAGTGACgctatatattgtttgtttgtgtgctctCTATTATTTGGTGCTGTATATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209634 lncRNA upstream 82529 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 182067 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 280840 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 289983 13484039 ~ 13484718 (+) True G154639
TU209551 lncRNA upstream 299253 13474159 ~ 13475448 (+) True G154634
XR_005641994.1 lncRNA downstream 164921 13946606 ~ 13954723 (+) True LOC120575454
TU209761 lncRNA downstream 268146 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 268407 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 326096 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 326141 14107826 ~ 14241105 (+) False LOC120575155
XM_039825274.1 mRNA upstream 20334 13748920 ~ 13754367 (+) True dnaja3a
XM_039825275.1 mRNA upstream 20335 13748929 ~ 13754366 (+) False dnaja3a
XM_039825273.1 mRNA upstream 82398 13666409 ~ 13692303 (+) True vasnb
XM_039825277.1 mRNA upstream 142946 13602828 ~ 13631755 (+) True glis2b
XM_039825278.1 mRNA upstream 142946 13623713 ~ 13631755 (+) False glis2b
XM_039823957.1 mRNA downstream 3151 13784836 ~ 13795684 (+) True ccnf
XM_039824604.1 mRNA downstream 15043 13796728 ~ 13827791 (+) True abca3b
XM_039824603.1 mRNA downstream 15648 13797333 ~ 13825565 (+) False abca3b
XM_039826243.1 mRNA downstream 50886 13832571 ~ 13838091 (+) True LOC120575447
XM_039826245.1 mRNA downstream 58464 13840149 ~ 13846908 (+) True LOC120575448
unassigned_transcript_849 other upstream 4925 13769703 ~ 13769776 (+) True trnat-agu_6
TU209346 other upstream 754033 13016986 ~ 13020668 (+) False LOC120574968
TU209291 other upstream 928104 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 1659509 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 2700875 11064422 ~ 11073826 (+) False LOC120574482
TU209715 other downstream 65454 13847139 ~ 13854286 (+) True G154743
TU210109 other downstream 1199551 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 1204015 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 1210328 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 1354106 15135791 ~ 15139706 (+) True G155088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU447544 True 1724 TUCP 0.50 2 CI01000208 554611 ~ 558680 (-)
rainbow trout (Oncorhynchus mykiss) TU1360419 True 2632 lncRNA 0.50 2 NC_048577.1 59983524 ~ 59986204 (-)