RNA id: XM_039823953.1


Basic Information

Item Value
RNA id XM_039823953.1
length 2133
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC120573994
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13769019 ~ 13781685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCCCAGCACGGAGATGTGACTTCCGCATCCGCTACGTTTTCGATTTCGCGGGTcagccatggatgtatttatTAAGAGAACGGGGTCCGCACATAAAAGCTATCGTTGTTTTAATGGAACGGCATTTTCACTGAACATGCTAACGttgattcatatttttaaaCCAACAGTTTGTTAATGGTTTCTTGCGTGTTTCCACGGCAGAACTAAGTCACCACAGCGCGACATCCAGACACAAGCATGTCACTGCTGTTTATGGTTGAGCAAGCTATCAAGTCATGCAAAGCTGAACAAGCCAAGATTAACGACAGTATACAACTCTACAGAGAACTATTACACACCTTAACGCCACAACCAAAGACGGACTGTGATGAGTCAGAATGTGCAGATGGTGCTGCTAtagACACAGTTACCTCACCAGGGGAGAAAGAAGATATGGAATTGCTTGAGCGAGCCCTGGAGAAAGCCCTCCGTGTCCGCACTGGCACAGGATCTTCTAAAAAAGCCTCAAAAAACCAATCTGCACCTCGAAAGGAACCCGGCACCACAGCTGTCACATCCAAAGAGGGAAGGCAGGCATTTGCAGCTTCTAAAGGAAATCAGACGACCACCAGATCAACATCTAAATCTGCTGGTCTTGACAGAAAAGAGCCCAAAAAGCCTGGTGGAATTGTGCATcaacaggcagcagcagcaaggaAATCGCAGCAGGCTGTCTCAGCGTCTGGCTCTCTTGATCGGGGTCAATTCCACACCTCAACCCTCCACTCTAAAAACCAGACTGTTAGAAGCAACGTGCTGAGTGGAAACGACCTGTGCAGAGCTGCAGCTATCTCCATTCCTTCAGATAACACAGTGCCTGCTTCACCCACACACAGGTCTGGAGCTCACAGTTTACTTCGACAGACTGGGAAAGCTTCTGATCAAACTTCAAAATGGAAATCTCTGAGGAGCAAGCAAAACAGGTTATGGGACAAAGTCGTTGCCCTACAAAGGAAACCTGCGCCTGGGAGGAGTCACTTCATGGAGAGAATGAGAGCTACGTTCCCCAAGGATTGGCCATGTGGCAGCCCAGATCAGACCAGGGCTCTGGTCAACAGACTGACTCACACAGGGCATGACCTCACCCAGCACTGCCAGACAAAAGAGCTTCTGGCCAAAGAGACGCCAGAAGCAGCCACAGAGCTGGGTGGTAAGGCAAACAAGAATGACTTCTTTCTGACACTTGAAAGGTTGTCGATGACAGCAGCACAACTCCAGTACTTTGCATACCAAGCGAAACAAGAGTGGGAAACATGGGATCGATGGAGGCCAGAGGCAGGTTGTCTTTGCCCCACTGGGGCAAATGGTGCGTGGGGAGATGGGATGATTGCACCCCTGCCCCTGACTATAACCTACACGACAGAGGCAGAGTTCAGAAAACTGGAGAAGCTGAGGATGAGGGTGGCACTGCTGCAACAGGAGCTGTACCTCGAGCAGGCTCTGTTGGACACTCTGTCCCCTCATCTTTCGTCTATAGTACCTGGGCCTGGATGTCCCAACTTCGGTGTGCTGAGAGACATGTACTCCCTGCTGGGTGAAGGAGGGGAGCATTTCCCTGCCATAGTCCTGGACTCAGGGACCCCATGTCTTCAGGCTCATCCTCCATGTGTTCCAGTTTCTTCCTGGCAAATCAACGTTTCTGAAGAGCTCACATTGGCTCCTCCCCTTCCCATATATATCCCCCGCCACTACATTCAGCAGAGTGTACAATGTACTGCCAGAGAGCCAGCAGTGTACAGCGAAACagcaagagagggagggaaagaaggGGAAAGTGCCAGAGCTGATTGCGAACGTGATCCAAGAGGCCAACGCTGCAACCTGGCTTTGGGATTCATCAGCCCACACCATCAGGATGGGCTGTACTACGGGCCACCTGGCTTGCCAAACCCAGCCCCAGACCAACGCGGGGCGGGAGGGTCAGTCCCTGGAGGCTGGTGGTGCTAAAGTCCCTGACGTGCTCTCCTCTCTGGAGCGTCTGTCCCAGGCCACTGGAGGCATGGAGAAGTCCTGGTACCGCTGCATCTTTCCCTTTGGAATCATCTCTTTGGTGATCGGCGTCGCAGGAACTGGAGTGACCTACACCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209634 lncRNA upstream 76854 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 176392 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 275165 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 284308 13484039 ~ 13484718 (+) True G154639
TU209551 lncRNA upstream 293578 13474159 ~ 13475448 (+) True G154634
XR_005641994.1 lncRNA downstream 167699 13946606 ~ 13954723 (+) True LOC120575454
TU209761 lncRNA downstream 270924 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 271185 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 328874 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 328919 14107826 ~ 14241105 (+) False LOC120575155
XM_039825274.1 mRNA upstream 14659 13748920 ~ 13754367 (+) True dnaja3a
XM_039825275.1 mRNA upstream 14660 13748929 ~ 13754366 (+) False dnaja3a
XM_039825273.1 mRNA upstream 76723 13666409 ~ 13692303 (+) True vasnb
XM_039825277.1 mRNA upstream 137271 13602828 ~ 13631755 (+) True glis2b
XM_039825278.1 mRNA upstream 137271 13623713 ~ 13631755 (+) False glis2b
XM_039823957.1 mRNA downstream 5929 13784836 ~ 13795684 (+) True ccnf
XM_039824604.1 mRNA downstream 17821 13796728 ~ 13827791 (+) True abca3b
XM_039824603.1 mRNA downstream 18426 13797333 ~ 13825565 (+) False abca3b
XM_039826243.1 mRNA downstream 53664 13832571 ~ 13838091 (+) True LOC120575447
XM_039826245.1 mRNA downstream 61242 13840149 ~ 13846908 (+) True LOC120575448
TU209346 other upstream 748358 13016986 ~ 13020668 (+) False LOC120574968
TU209291 other upstream 922429 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 1653834 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 2695200 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 3016128 10752160 ~ 10752898 (+) True G153808
TU209715 other downstream 68232 13847139 ~ 13854286 (+) True G154743
TU210109 other downstream 1202329 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 1206793 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 1213106 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 1356884 15135791 ~ 15139706 (+) True G155088

Expression Profile