RNA id: XR_005641809.1


Basic Information

Item Value
RNA id XR_005641809.1
length 2145
RNA type transcript
GC content 0.47
exon number 10
gene id LOC120573994
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13769019 ~ 13781685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaGCCCAAGCCCAGCACGGAGATGTGACTTCCGCATCCGCTACGTTTTCGATTTCGCGGGTcagccatggatgtatttatTAAGAGAACGGGGTCCGCACATAAAAGCTATCGTTGTTTTAATGGAACGGCATTTTCACTGAACATGCTAACGttgattcatatttttaaaCCAACAGTTTGTTAATGGTTTCTTGCGTGTTTCCACGGCAGAACTAAGTCACCACAGCGCGACATCCAGACACAAGCATGTCACTGCTGTTTATGGTTGAGCAAGCTATCAAGTCATGCAAAGCTGAACAAGCCAAGATTAACGACAGTATACAACTCTACAGAGAACTATTACACACCTTAACGCCACAACCAAAGACGGACTGTGATGAGTCAGAATGTGCAGATGGTGCTGCTAtagACACAGTTACCTCACCAGGGGAGAAAGAAGATATGGAATTGCTTGAGCGAGCCCTGGAGAAAGCCCTCCGTGTCCGCACTGGCACAGGATCTTCTAAAAAAGCCTCAAAAAACCAATCTGCACCTCGAAAGGAACCCGGCACCACAGCTGTCACATCCAAAGAGGGAAGGCAGGCATTTGCAGCTTCTAAAGGAAATCAGACGACCACCAGATCAACATCTAAATCTGCTGGTCTTGACAGAAAAGAGCCCAAAAAGCCTGGTATGTCAGTATCCTCCACACTGGAACACTCAAAACCTTCAGCTAGCTACAATCCCGGACAGTGCAAAATCAcaatcaaaagaaaaataaccAGAACTGTCTCTTCAGGTGGAATTGTGCATcaacaggcagcagcagcaaggaAATCGCAGCAGGCTGTCTCAGCGTCTGGCTCTCTTGATCGGGGTCAATTCCACACCTCAACCCTCCACTCTAAAAACCAGACTGTTAGAAGCAACGTGCTGAGTGGAAACGACCTGTGCAGAGCTGCAGCTATCTCCATTCCTTCAGATAACACAGTGCCTGCTTCACCCACACACAGGTCTGGAGCTCACAGTTTACTTCGACAGACTGGGAAAGCTTCTGATCAAACTTCAAAATGGAAATCTCTGAGGAGCAAGCAAAACAGGTTATGGGACAAAGTCGTTGCCCTACAAAGGAAACCTGCGCCTGGGAGGAGTCACTTCATGGAGAGAATGAGAGCTACGTTCCCCAAGGATTGGCCATGTGGCAGCCCAGATCAGACCAGGGCTCTGGTCAACAGACTGACTCACACAGGGCATGACCTCACCCAGCACTGCCAGACAAAAGAGCTTCTGGCCAAAGAGACGCCAGAAGCAGCCACAGAGCTGGGTGGTAAGGCAAACAAGAATGACTTCTTTCTGACACTTGAAAGGTTGTCGATGACAGCAGCACAACTCCAGTACTTTGCATACCAAGCGAAACAAGAGTGGGAAACATGGGATCGATGGAGGCCAGAGGCAGGTTGTCTTTGCCCCACTGGGGCAAATGGTGCGTGGGGAGATGGGATGATTGCACCCCTGCCCCTGACTATAACCTACACGACAGAGGCAGAGTTCAGAAAACTGGAGAAGCTGAGGATGAGGGTGGCACTGCTGCAACAGGAGCTGTACCTCGAGCAGGCTCTGTTGGACACTCTGTCCCCTCATCTTTCGTCTATAGTACCTGGGCCTGGATGTCCCAACTTCGGTGTGCTGAGAGACATGTACTCCCTGCTGGGTGAAGGAGGGGAGCATTTCCCTGCCATAGTCCTGGACTGTGAGCTTGACTGACTACAGAGCATATTACACTGAGTTACCAGTTATACTCCGTTTACCTCCTCCTTACATTCATAAGATAAATCAAATATTACCTCTcagtattattataataataataataataataataataataataaaaataataataataataatccagtgCAACGGCAGTTGAATCATACCCCTCTGACACTGTCAATAAAACTAGAACATAAAGATCACAACAATAAAATGAATTGCAAGACCATTACATTGGATTGCTTTAGGGCAAGCAGGTGTACCTAATATAGTGGTAACTCGGTGTATATTTGTCCTTAAATCAAGCAGGGACCCCATGTCTTCAGGCTCATCCTCCATGTGTTCCAGTTTCTTCCTGGCAAATCAACGTTTCTGAAGAGCTCACATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209634 lncRNA upstream 76847 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 176385 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 275158 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 284301 13484039 ~ 13484718 (+) True G154639
TU209551 lncRNA upstream 293571 13474159 ~ 13475448 (+) True G154634
XR_005641994.1 lncRNA downstream 171053 13946606 ~ 13954723 (+) True LOC120575454
TU209761 lncRNA downstream 274278 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 274539 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 332228 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 332273 14107826 ~ 14241105 (+) False LOC120575155
XM_039825274.1 mRNA upstream 14652 13748920 ~ 13754367 (+) True dnaja3a
XM_039825275.1 mRNA upstream 14653 13748929 ~ 13754366 (+) False dnaja3a
XM_039825273.1 mRNA upstream 76716 13666409 ~ 13692303 (+) True vasnb
XM_039825277.1 mRNA upstream 137264 13602828 ~ 13631755 (+) True glis2b
XM_039825278.1 mRNA upstream 137264 13623713 ~ 13631755 (+) False glis2b
XM_039823957.1 mRNA downstream 9283 13784836 ~ 13795684 (+) True ccnf
XM_039824604.1 mRNA downstream 21175 13796728 ~ 13827791 (+) True abca3b
XM_039824603.1 mRNA downstream 21780 13797333 ~ 13825565 (+) False abca3b
XM_039826243.1 mRNA downstream 57018 13832571 ~ 13838091 (+) True LOC120575447
XM_039826245.1 mRNA downstream 64596 13840149 ~ 13846908 (+) True LOC120575448
TU209346 other upstream 748351 13016986 ~ 13020668 (+) False LOC120574968
TU209291 other upstream 922422 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 1653827 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 2695193 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 3016121 10752160 ~ 10752898 (+) True G153808
TU209715 other downstream 71586 13847139 ~ 13854286 (+) True G154743
TU210109 other downstream 1205683 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 1210147 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 1216460 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 1360238 15135791 ~ 15139706 (+) True G155088

Expression Profile