RNA id: TCONS_00006856


Basic Information

Item Value
RNA id TCONS_00006856
length 1335
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_003498
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27133560 ~ 27197452 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTGTCTGCAAATGTTTAACAGAAACAGTATTCTTCATTAAGAGGATGTTTGCATGTGTTCTGTTCACAAATAAACGCCTAGACGACGATTAACTTCACCGTAGAAATAAGAGAAATATAAAATGGCTAGCAGCTGAAAATTGACATGCTGTGGCAACAATGTCAAAGAAAGAAGATTCAGGAGGAAAGAAATGTTCCCACCACACAGAACTTTACGCAGAGGTCCCTGCGTCATGCCTGCCCATTGTATATTCCCCAGAGTACAACATCACCTTCATGGGCCTGGAAAAGCTGCATCCCTTTGACGCTGGCAAGTGGGGAAAGGTCATTCGCTTCTTGAAAGAAGAGCAGTTCATCACCGATGAGATCATTGTTCTGGCTCGGGAAGCCAGCGAGGCGGATCTTCTTGTGGTTCACACGGCACGGTACCTGAACAGACTTAAGTGGTCTCTGGTGGTTGCCACTATCACAGAAATCCCACCTCTCCTGTTTCTGCCTAACTTCCTGGTACAGCGCAAAGTGCTGAGACCATTACGAACACAAACAGGAGGAACCATCATGGCTGGAAAGCTGGCAATAGATCGAGGATGGGCAATAAATGTTGGAGGAGGCTTCCATCACTGCTCAAGTGACAAAGGAGGAGGTTTTTGTGCCTATGCTGATATCACACTTGCTATCAAGTTTCTCTTTGAGAGGGTTGAGGGAGTTGCCAGTGCCACCATCATTGATCTGGACGCCCATCAGGGAAACGGCCACGAGCGGGATTTCCTGGAAGACAGACGCGTTTACATAATGGATGTCTATAATCGCCACATCTATCCAGGAGATGGATATGCAAAGAGGGCGATTAAACGGAAAGTGGAGCTGGACTGGGGAACCGAAGACAGTGAATATCTACAGAAGGTGGATCTCCATTCAGAAGGGGCACTGAATGAAGCACGGCCTGACATTATCATATACAACGCAGGAACAGACATCCTTGATGGAGATCCACTCGGGGGCCTGGCTATTTCCCCACAGgGTATCATAAAGAGGGATGAGATCATCTTCAGGGCGGCCCGGAGGCGAGGAATCCCCATCCTAATGGTGACATCAGGAGGCTACCAGAAGAAAACGGCCCGTATCATCGCTGACTCCATCCTCAATCTTCACAGACAGGGTTTGATTGGTGAAGAGGCTTTAGATGTTGCGGGACCCTCACACGTGTCACTTATGATGAGTAAATCTGTGTCATCAGGTTCTACGCTTGCTGCCATTTAAATGCTCCTAATCTGGGACTTCTTTAAGTGTGTCAAACACGCTGTTAATCTACCTAATACAAACATTTAGAACT

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko04613 Neutrophil extracellular trap formation
ko05203 Viral carcinogenesis
ko05034 Alcoholism
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040704-7 Predicted to enable histone deacetylase activity. Predicted to act upstream of or within histone deacetylation. Predicted to be located in nucleus. Orthologous to human HDAC11 (histone deacetylase 11).

Ensembl:

ensembl_id ENSDART00000158411

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008619 lncRNA upstream 424480 26702957 ~ 26709080 (+) True XLOC_003497
TCONS_00006846 lncRNA upstream 735073 26396639 ~ 26398487 (+) True XLOC_003492
TCONS_00006845 lncRNA upstream 735530 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00008618 lncRNA upstream 899491 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00008617 lncRNA upstream 937415 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00008620 lncRNA downstream 9744 27207196 ~ 27208386 (+) True XLOC_003499
TCONS_00006860 lncRNA downstream 166538 27363990 ~ 27364956 (+) False XLOC_003500
TCONS_00006863 lncRNA downstream 206419 27403871 ~ 27414474 (+) True XLOC_003501
TCONS_00008621 lncRNA downstream 316408 27513860 ~ 27526561 (+) False XLOC_003502
TCONS_00006864 lncRNA downstream 316422 27513874 ~ 27526561 (+) True XLOC_003502
TCONS_00006855 mRNA upstream 449848 26669724 ~ 26683712 (+) True XLOC_003496
TCONS_00006854 mRNA upstream 517952 26609110 ~ 26615608 (+) True XLOC_003495
TCONS_00006850 mRNA upstream 524924 26604224 ~ 26608636 (+) False XLOC_003495
TCONS_00006851 mRNA upstream 524927 26604293 ~ 26608633 (+) False XLOC_003495
TCONS_00006852 mRNA upstream 524950 26604303 ~ 26608610 (+) False XLOC_003495
TCONS_00006858 mRNA downstream 76903 27274355 ~ 27383732 (+) False XLOC_003500
TCONS_00006859 mRNA downstream 149624 27347076 ~ 27374532 (+) False XLOC_003500
TCONS_00006861 mRNA downstream 166607 27364059 ~ 27372368 (+) False XLOC_003500
TCONS_00006862 mRNA downstream 166886 27364338 ~ 27382736 (+) True XLOC_003500
TCONS_00006866 mRNA downstream 345641 27543093 ~ 27545719 (+) True XLOC_003504
TCONS_00006853 other upstream 518973 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 1055499 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 1650590 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 1655142 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 1831003 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006865 other downstream 323004 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 2154649 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 2369295 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 3774582 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 3777319 30974771 ~ 30974892 (+) True XLOC_003550

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_04050451_04054257.mRNA True 720 mRNA 0.42 5 CI01000306 4050332 ~ 4054402 (+)