RNA id: XM_039823677.1


Basic Information

Item Value
RNA id XM_039823677.1
length 4286
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120573826
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10209890 ~ 10286541 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCGCGCTGCTGAGCCTGCGACGTTAGCCGTGGATGAAAAAACAAATCTCTCTTTTTGCTTCAGCCGACGGACACATACTTTGGAAAGGAAATAAGTGAAGGGAAAAGCTGTTGAGCAGAAAGAAGGGGGGTGCAGCGAAGCGTATCTGTTTGAGAGAAGGTGTTGGTTCTCTTGTGGTGACATACCGAAGCAACGCGTATGTGAGTACTTAGATACTTTCCAGTTTTCATAAAGGACACACAGCAGAGTGGTCAGACGAGAGAAAGGAGCAATCTTGTGTCTCAACAGCCGAAGAGTGAGAAGTTGCAacaaagacaggaaacagATTCTCTATTACTCCAAGGATCCATCCATTTGACTGAGTCACAGCTGAAGCCAAAGGAGAGACTATGAAGACAAGCTGTCTCACCCCGCATTGCAGCCCAACAAAATATGACATAACATGGATCCTCTGCTAATCACCATGACCATAAAGCTGTGAATGGCATTGTGAAGCCTTCACCCCTTTCTCAGCACCCAATCCAGACCCTTCTCTTTTAAAATCCTTCATAGCAACCGTTGTTGCTTCCCCTGTCTCCTGCAAACGCGACCTCCTTTCCTGCCTGCCCCTACGTTTCTGTCCTTAATTATTATttagatttcttttctttcgcaTCATGCAGGGTGCATCAACCACCTCCACTCTCCTTTTACTTATTCTCTCCTCCTTCATATTCTTCTCCCACATTCCCTACATGGTCAATGGGGACTGCTGGCTCATTGAGGGGGACAAAGGCTATGTGTGGCTGGCTATCTGCAGTCAGAACCAGCCGCCGTACGAGACTATCCCCCAGCACATAAACAACACGGTCCATGATTTGAGATTGAATGAGAACAAGCTTAAAGCTGTGCTCTTCAGCTCCATGTATCGGTTCACCAACCTGACTGATCTCAACCTCACCAAGAATGAAGTAAGCTATATTGAGGATGGAGCCTTTGCAGGACAAGCCAACCTACAGGTTCTTCAGCTGGGCTACAACAAGTTGACGAACATAACTGAGGGTATGATGAGAGGCCTTGGCCGCATGCAATGCCTCTTCCTCCAGCACAACCTTATTGAGGTTATTGCcagcaatgcattctgggagtgtcCCAGCCTCAGCAGCATTGACCTGTCATCCAACAAACTTGGCCGCATTGACCCATCCACATTCACAGTTCTCAGTCGGCTGATGGTGTGTGAACTGGCAGCAAATCCATTCCATTGCGGCTGTGATCTTTATAGTTTCCTAACCTGGTTGGAGTCCTTTAATAATGTAACACACACCTATGACCGCCTCCAGTGTGAGACGCCCCGGGAAATGTTTGGCTACCCGTTACTTATCGCTGCTGGCCATACTGGTCGAAATGCCAAAAGCATTTTGTACCATCGCTGCAGAGATGGCGTGATGATTCCAGGAATGACTTCTCTACCACCAGATCTTGATGGTCCTTCCGGGATTGGACCAGAGATGTTTGGTGGTGTGGGGCCGTACCACCAGCCCACCACCTCTTCCTCATCCACGGAACACAGCATTCCCAGCATCAAGCTCAAACATGTCTCTTTGTCATCAGCCTCTGTCCTTGTGCAGATCCCAAATCCCTACAGCAAAATGTATATTCTAACACAATACAACCAGACCTTTGTGTCTGACGTCATGAACTTGAAAAACAGGAAGGAGATGATCACCCTCAGCAAGCTCAAGCCACACACCAATTACTCCTTCTGTGTAGCATCCATCCGCAACTCTCAACGTTACAACCACACCTGcgtccagttttccactcgggCTCCAAATCAGGATGACATGCTGCCCACACCTTCCACAACTACTCACTACATAATGACCATTGTGGGCTGCCTTTTTGGCATGCTCATTGTTTTAGGCTTTGTCTACTATTGTCTACGTAAGAAACGGATGCATGATGAGAAGAGGAAGTCCATCTGTGTCAAGAAAACTATATTGGAAATGCGCTATGGACCAGAGgtggcagcagcagtggcaAATGATCCATCAGCAGTCCATAAGCTTCAGGAACAGTCCAGAGAACATCACCAGTATCAGCACCAACATGGAGGCAAACTTCCCATGTCCGCATCCTCTAGTTCGGGAATGCTCCACTCAGCTAACACCAGTTCCTCCAGACTTTCCTCTATCCCACAAGTAGAAAAGATGGCCACTGCCTTTTCAGAGGCCATGGCTAGTAAAGGAAACTATATGGATGTCAGAACTGGAGGGGCAGGAATTGAGAGGTTGGGAGAGGGTGGGCATGGAGGGATGGACTTGAGGGACGATGATGGAAGTGATATTGGTGATGACTCAGATGATGACGGTCGTGGCTCTGCATCAGAGATTTCCACCATTGCCATGGAGGTGGACAAGGTTAACCAGATCATTAACAACTGCATCGATGCACTGAAACTGGATGCAGCAGCAGTTGCTGCTTCAGGGGCCTCTACTAACCTTATGTCCTGTTCCAATCCAacctcccctccccccaccaGCACGTCCTCCCTTACTCGTGGCCTAATCCCACTCTCCCAAGGGGTGACAGAGACGTGCCAAATCATTGCTCCCAACAAAATACCCCCTCCACCTCCACTCCCTGCTTTGAATGCCCCTCTCTCTGAGCGCCCAGGGATCAGTGGTGGTGGCTTTGTCGTCACTCCCCCCTACAGGCCCCCTCCACCAGCCACTGCTGTACGTCCTATTCAGCGACAAATGAGTGCAGATGCAGCTGTGGTTATTGTAAATGCTGTTAAGAAACAGTGCAGCACCACCTCTTGTGGCTCCATGGGTCGGGACAGGGAACGTGGAGGAGCTAGGGTGTATAGCCTGGATGTTCCTGAGCCACGTAGCCCAGATGCCTGTAATCAACAACAGCAGCACTACCCAGAACGGGCCAGTCCCGTGGGCTGTGGGGAGCCCCTAGAGAGGCTGCCTTTAGTGGGAAGTGGGAGCTGcggtggggggggtggtggtggttgcGACAGTGGTGGTGTTGGTGCCCAACATAAGGACAGCCAGAAACAACACCATTACCATCAAAATCAACAAATacaacatcagcagcagcagcagcagcagcagcagcagcagcagcagctagagGTGCAGCAGGACTACCACTGCTCGGAGCACCGCCACTCCGTCCCAGCTCTATATTATGAAGGCTCCCACCAAGGCTCCCCAGCCCAAAAGGTTTCCTTTTTGAAGCCCCTGACGCGCTCCCGCAGGGATGCAGCATCTTACTCCCAGCTTTCGCCTGCCCGCCACCATTCCAGTTACTCTGGCTACTCCTCCAGCCCAGAGTACTCCTCAGAGAGCTCACTGAGGATCTGGGAGCGCTTTCGTCCCTACAGGAAAGGCCAGCGTGATGAGGCCTGTTATGTGACTGCCGGAAATGCCCTTAGAAAAAAGGTGCAGTTTGCTAAAGGCGAGGACCTGCATGACATCCTTGATTACTGGAAGGGGGTGTCAGCACAGCAGAAGCTGTGACTGGAGGACCAGGGATGGGTATTGTGGGAAAAATAGTTTGGATACTTCTTTTCCTGATAGGCCAGTGAGCCAGACAAAACAATATGaagatggggaaaaaaatgtagGACAAAATtttgcctttgtttttttttggcatgcTAGGTGTATAGAATATTGTGCTAAAGCAAGGACTGTGAAACTGTGCCTGGGATATGAGAGTTATGatggtgttttattttacacttttttgtaGCACCTTTTTTGGATCATTCTCATTTGGCGTTTGTGGGTTTTATTTATAGCACAGGGAGCAAATGCCAACTGTGTTATTTAGTACTCTTTGTGTGATCATGGTTTGTGATCCTAAGGACCGTCTTTATCAGTGCCATGTTTTCATCTATGGGTAATCACAGAAGTTAAATGCTGATATCCTTCATTTTAAGCTTGTGTGATCCAAGGTGTTGTTTCCTATTCGGTATTGGGTACTGTATTAATTTGCAGTGTGCACTTGGATATGCTTAGGCTTCTAAGTGAAGGGAGACTATGACGGGTGGGAACTCTGCTTAGTTACAAGTGACAACATGCCGTTTAGTGAACAGAGTTGTTAAATGCAGACCCTATCTCTCTTCCATGAGATCATACATGCAGCATAGGTATTTGCATGTCTATAGCATCTGtaacacagaaagaaagaagaaattgGAATGAAATGAACAAATGAACACTTGACTGAAAACAGTCAAGTGGGCTTAAAGTTCCTGCAGCATAAGACatttatgagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207800 lncRNA upstream 256535 9950608 ~ 9953355 (+) True LOC120574664
XR_005641879.1 lncRNA upstream 259018 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA upstream 259018 9948607 ~ 9950872 (+) False LOC120574664
TU207847 lncRNA upstream 274852 9921552 ~ 9935038 (+) True G153423
TU208227 lncRNA downstream 112584 10399125 ~ 10399353 (+) True G153684
TU208283 lncRNA downstream 315876 10602417 ~ 10602964 (+) True G153740
TU208291 lncRNA downstream 323050 10609591 ~ 10638479 (+) True G153746
TU208356 lncRNA downstream 422827 10709368 ~ 10709629 (+) True G153799
TU208383 lncRNA downstream 500321 10786862 ~ 10818172 (+) False G153817
XM_039825744.1 mRNA upstream 18726 10183235 ~ 10191164 (+) True LOC120575114
XM_039825863.1 mRNA upstream 46284 10159441 ~ 10163606 (+) True LOC120575195
XM_039825864.1 mRNA upstream 50730 10156440 ~ 10159160 (+) True alkbh7
XM_039826307.1 mRNA upstream 153354 10055408 ~ 10056536 (+) True ier2a
XM_039824999.1 mRNA upstream 160427 10035331 ~ 10049463 (+) False LOC120574578
XM_039824224.1 mRNA downstream 50702 10337243 ~ 10352499 (+) True sgsm3
XM_039824223.1 mRNA downstream 50702 10337243 ~ 10352499 (+) False sgsm3
XM_039824225.1 mRNA downstream 50702 10337243 ~ 10352499 (+) False sgsm3
XM_039826260.1 mRNA downstream 107566 10394107 ~ 10398348 (+) True lgals2a
XM_039824439.1 mRNA downstream 131477 10418018 ~ 10559589 (+) False cacna1ia
TU207863 other upstream 143148 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 235317 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 271286 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_844 other upstream 273609 9935671 ~ 9936281 (+) True LOC120574414
unassigned_transcript_843 other upstream 275695 9931152 ~ 9934195 (+) True LOC120574413
TU208368 other downstream 465619 10752160 ~ 10752898 (+) True G153808
XR_005641865.1 other downstream 777881 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 1799320 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 2556882 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 2730445 13016986 ~ 13020668 (+) False LOC120574968

Expression Profile