RNA id: TCONS_00006858


Basic Information

Item Value
RNA id TCONS_00006858
length 5443
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_003500
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27274355 ~ 27383732 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAAAATTCTCAGCGCGCTCAAGCTGCACTGTGTAGGCTTGATAAAGCAAGTTAGTTGGCTGCAACTTCTAACCTATGGACACGCACGGAAGAACGTGACCAACGCGAGGTTTCACTAACAGCCTGCAGTTCACAAGAGGAGAGTCAACTGTTCAGAGCCTGGATTGTATTGGGGACATTTATCACCTGTTGATACACTAACATCAAGGCAAAATGGGCCGTGGCCTCTTGAACTTGGCATTTTTGTTGAGTATGAGTGGCTGCCTTGGACAAAAGGATTGCACTGGTGTAGATTGCCCTGAACTGCAAAACTGTATAGAAGAGGTCTTGGACACCGGAGCATGTTGTGCTACCTGTGTACAAACAGGCTGCATGTGTGAGGGGTACCAGTATTATGACTGTATCAGTGCTGGCTTCAGAAACGGCAAGGTTGCAGAAGGAGAGTCATACTTTGTGGACTTTGGGAGTACTGAATGCTCTTGTCCACAAGGGGGTGGACGGATCAGCTGCCATTTTATACCATGTCCTGAAGTTCCAGCTAACTGCATAGAATTGTCGGAGCCGGCAGATGGGTGCATTCAGTGCGAGCGAGTAGGATGCGTTCACAAGGATCAGAAGTACGAAGCTGGTCACACATTCCAAATTGACCCTTGTGAAGTATGCCACTGCCCAAATGGTGGTGGGGATCTAATGTGCTATCCGGTTCCAAGCTGCAATCCAAGTCGGGCTTCAAAACCCATGCTGATGACAACAACTGAAGAAACCACACAAGGGATGCCCTACCGAGACCccataatgcacatttttaacaATCAAGGCTCTAGAATTCCCTTTACCAAACATTTTCCCTTGCATGCCAATAACAATCGTCCTTTTAAGCTACATATGAGAAAAATAGATGAAAAAGAGGAGGATGAGGAAGACTATGATTATCCACCCACTGATTACTCAGCTCCTTCTCATGATGATTTTGCGGCTCCCACAGAGTCATCCATCATGTCGGTATCTCGTTCAGATAATTTTACCCCCCACCAGGGTGTGCACAGGGGTGCTAAGCAAGAGCTGAGAGAGATGCTTGGTATTCATAGGTCCACAACAGAAAGGCCACAGTTTCCTTTCTATAAGGACAGTACAGACCGAATGAGAGTAGGCACTCGCAATGACAAACCAAAAAATGAGCTATTCAGCCCTCTGGAATATAAAACAGACCGGGAACGATTCATCCTTCCTGTGGAAACTACAAACAGACTGGGATTCTCCAGTCACAAAGACGCTTCTGAGATCCATAGCTTTAGTCTTTATAAAGACAGCTTCAATCAAGAGGCCCTAACAGATGATGAACAGCTTGAATTTCCTTCAGAAACTACTGATGGGGAAAGAGATACCTCACAGGAGGACACCACATACAGCAAGACAGTTACTGACTCTCCAGTGACTATTGAGAAAACTACATCATCTCCACTTTGGGAAACCACAATTTCAATGCAAGCTGCTTGGGATGTTGGATCAGAGAGTCAAATTCGCAAACTTTTCCCAAATACTGTGGAAACAGATGGCTCCAAACATGAAGAAACCATCACCAGAGAGTCTAGTAAAGAAAAAGCAGCTGTTCTGAATGAAACTACAAGTCTGTATGGCTTTCGATCAATCACTGGTGATCAGAATGAATATATCTTGAGCACTCCAGATCCTGCTAAGCAAAGTGTGACCATCCCAGCTGAAACTTTACCAGAACATGAAGAATCAGTAGCCGaagttgaagatgaacacaaaaggCTTGCAGTGAACCACAGAGAACCACCTGAAGACCACAAACAACTTCCTGTTAAAAACACAAAACCCCTTGAGCACCCAAAACCTGAAGAAGAACATGTGCAGAGCACCTCAGCAAAGCACAACACTGAACTTGAGAGGAAACATCAGTGGCACTTGTTCTCTCCAGTTACCTTCAGTCCAACCAGCCCACCTTCAAACAAACAGTCCCACAGTCTGTTTAACTTCAGAGAAGAGGAGGACGAGGCAGACAACACCCTCAGAGCTGCTTTTGTGGATGAGCAAGGACTGGTGGAGAGCTGTTGTGTGGCCGGGCAGAAATGGGCTGAGGAGAACCAGCAGTGTAACCGAATGGCTGTCAAAACAGAAGACATCAGCTCTGTGTGTGGTGTGGTCCAGCAACAGTGTTGTTCGGGTGCTCTGAGAGAGAGCAGGTGTCAGGCTGGCATCATTGCAGCAAAGGCCGGACGTGCCTGTCAGAGAAACAGCCCGCTCTGTGGCGAAGACTCACAAACAGACTGCTGTAACTGCTGTGCGCTGGGTCTGCGTTTGCGGAGGGAAGGTAAAGGTTGTGAAGCTCATCAATACCTGAGTTACCCATGTGGACACGTCTTCCTCACGTGCTGTGAAGATGCTGAGGAAGGTCTTCCTCTACCCACCATCAAGAAAAAGCAGAGGCCTCAGCCAACCGCTCTTCCAAAGAGAGTATCAGACAGTCAGTTTTGGAAGCAGGCGCTGTCAGCCGGGGATGTGGATCCCGCAGTTAATTCACTGGAGGATTTGGAGCATGGTGACAGATGCCAGAGATTTGCTTCGCTCTGCCATCACACCTGCATCAACACCCGCGACTCCTACCTGTGCGCCTGCCACCCCGGGTACACACTCCTGCAGGATGGCCACACCTGTGTGTCAGAGAACCAGGAGGAAGACAACAGAGTTAGCGAGGAAGACCGGATCCCTACTACAGTTCCAGATAAACAACAAACTACCACTCAGATGCCGGTCTTACATAACCCCTGTGCAGGTAATGGGCTGTGCTCTCAGAAGTGTACTGTGGTTCAAGAACTGGCCCAGTGCTCCTGTTTCCCAGGATTCTTTCTGAAACCCGATGGACACACCTGTGAAGATGTGAATGAGTGCCTGAACGGCAGACACAATTGCTCCCTGGACGAGGTGTGTAAGAACCACGAGGGCTCCTACCAGTGTGAGCGGGTCAATGAGATGTGCCATAAGGGCTTTATTCACAAACACAATAGAGATTGTGTGGatgtgaatgagtgtgtgacgAACACACACACCTGTCGGGCAGACGAGCGCTGCGTGAACTCAGTTGGAGGATTTGTGTGCGAAAGGATGATCTTGTGTTCGAGTGGTTACCAGCTGAGAAATGGAGTATGTGAAGACATCGACGAGTGTGTTATACGAACTCATAACTGTGGGATGGGCTTCCAGTGTCAGAATACTGATGGTTCATTCACGTGTAAGCCGAAACAACGCTGTCTCACAGGCTTCACTCAGGACTCACATGGCAACTGCATTGACATTGATGAATGCAGCAGTGTGAGAGAACCATGTACGACTGGCTTCAACTGCATAAATACTGTGGGCTCCTATACCTGTCAGCGCAAGATCATCATGTGCAGTCGAGGTTACCATTCCAGTCCAGATGGAGCTCGATGTATTGATGTGGATGAATGTCAGACGGGCACACACCGCTGTGGAGAAGGCCAAATCTGTCACAACCTGCCCGGCAGCCACCGCTGTGACTGCCAAACCGGCTACCAGTACGACACCATCCGCCAGCTCTGTGTGGATGTAAATGAGTGTTGGCGGTACCCGGGCCGACTCTGTGCCCAGACCTGTGAAAACACGCCAGGCTCGTACCAGTGCTCCTGTACCACAGGCTTCTCCTTGGCCTTTGATGGCAAGAACTGTGAAGATATTAATGAATGTGACAGCAATCCCTGCAGTCAGGAGTGTGCAAACATCTACGGCTCTTACCAGTGTTACTGCCGAGCAGGCTACTACCTGAAAGAGGACGGCCACACTTGTGAAGATATTGATGAGTGCTCACAGAGCATTGGAAACCTGTGTGCGTTTGAGTGTGTGAACGTGCCAGGGAGCTACACATGTGCCTGTCCTCCTCATGGTTATTCAATGTCAGCTAATGGACGCACTTGTCAAGATATTGATGAATGTGCCATTGGATCGCACAATTGCTCTGCCTCCCAGACTTGCTTCAACATCCAAGGAGGCTTCCGTTGTCTGTTGTTTGAATGTCCTGACAACTACAGGAGGGTGTCGGACATACGCTGTGAACGAATGAGTTGCCCCAACTACCAACAATGCCAGACCATGCCATTACGCATCACCTACTACCAACTGAGCTTCCAGACCAACATCGTCATCCCAGCTCAGATCTTTCGAATTGGACCTTCACCCGCATACTCCGGCGACaacatcatcatcagcatccCGCGCGGAAACGAAGACGGCTACTTCAGCACACGGAAGCTCAACAGCTTCACCGGCGCCGTTTACCTACACCGGCAGGTTCGAGAGCCACGGGACTTCTTTATCGACGTAGAAATGAAGCTGCTACGTCAAGGAACTTTCACAACTTTCCTGGCCCGCATCTACGTGTTCATCACAGCAAGCTCTATGTGATGTGATGACACCTTTGATTTCGCATGGTGCTAAACTCTTCAGGCTTCCGTCTTGAAGTTGTTTGTCATCTGGCAGATCCTTAAGGCTTCTGTTTGCCTAACGGATTTTTGCTCAGAGAGACTTTGATGGGACTCTCCCACTGGGATCCAACCGCTTGTTTTGAGTAGAGCGAGAACAAACAGGACAGAGCATAGAGACTGACAGAAACATTTGGCTTTTAAAAATCCTAGTTTTTCCTCTTCAAAGTATCAAAAGTACTCTACACCAGATGCTATTTATACCGCACCAATTTATCTTGATTGCCTGAAACTGCTTTTTATAGCACTTCATTACTTTTTCCTAACAACACAAGGTTTCTCCTAGGGGGTTGGCAGAATAGAGCTGAGGTAGAATTAGGGGTTTTGTAATGGCTGTCACAAATCCTCCATTCAACTGCTGTGCCGTTTAAACGTCTAATCATTTCACAGCTCATCCGATACAGCaaataactgtatttaaaaaCGTACCTGTGTATAATCCCCACGAGTATACCTCAGTTCACCTCTGCAAACGAGAGACATTGTTTTTGTAATCATTGTTAGCAGTTAAAAAGCtgtatgattgttattattactgtttcaAACGGGCTCCGTTCGTAGCTCTTGGTGCTAATATACGGTTTTGGAAACATTTGACACGCATACATGAAGAGTGTGTAAGCTCCAAAGCAGCACTGAGAATATTGTATTGATAAACGTCAATTTGTATGTCTTTACATTGTAATACTACACCTGTTTTGATGTATTACTGTCTTGAAAATTCATCTCAGGGTTATAGCTTCAAATCATCTCAAGATATGTTGATATCTGATATCAGAACACATTCCTACTCATTATCAAAACATATTAGGTAAACTCATGAAACAACCAAATGCATCAGTATTGCATAAGTATATTAATGCAAGACATATTATCTCCCTTAATGGATTCAGTTCCTCAATAAAGCAACACCATCATTCCTTC

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060711-1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including cardiovascular system; hypochord; intestinal bulb; mesoderm; and tail bud. Orthologous to human FBLN2 (fibulin 2).

Ensembl:

ensembl_id ENSDART00000113707

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008620 lncRNA upstream 65969 27207196 ~ 27208386 (+) True XLOC_003499
TCONS_00008619 lncRNA upstream 565275 26702957 ~ 26709080 (+) True XLOC_003497
TCONS_00006846 lncRNA upstream 875868 26396639 ~ 26398487 (+) True XLOC_003492
TCONS_00006845 lncRNA upstream 876325 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00008618 lncRNA upstream 1040286 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00006863 lncRNA downstream 20139 27403871 ~ 27414474 (+) True XLOC_003501
TCONS_00008621 lncRNA downstream 130128 27513860 ~ 27526561 (+) False XLOC_003502
TCONS_00006864 lncRNA downstream 130142 27513874 ~ 27526561 (+) True XLOC_003502
TCONS_00006867 lncRNA downstream 241344 27625076 ~ 27649659 (+) False XLOC_003505
TCONS_00008403 lncRNA downstream 241352 27625084 ~ 27649582 (+) False XLOC_003505
TCONS_00006856 mRNA upstream 76903 27133560 ~ 27197452 (+) False XLOC_003498
TCONS_00006857 mRNA upstream 76974 27134116 ~ 27197381 (+) True XLOC_003498
TCONS_00006855 mRNA upstream 590643 26669724 ~ 26683712 (+) True XLOC_003496
TCONS_00006854 mRNA upstream 658747 26609110 ~ 26615608 (+) True XLOC_003495
TCONS_00006850 mRNA upstream 665719 26604224 ~ 26608636 (+) False XLOC_003495
TCONS_00006866 mRNA downstream 159361 27543093 ~ 27545719 (+) True XLOC_003504
TCONS_00006869 mRNA downstream 585102 27968834 ~ 27997774 (+) False XLOC_003508
TCONS_00006870 mRNA downstream 585313 27969045 ~ 28010171 (+) False XLOC_003508
TCONS_00006871 mRNA downstream 589323 27973055 ~ 27989394 (+) True XLOC_003508
TCONS_00006872 mRNA downstream 723900 28107632 ~ 28126139 (+) False XLOC_003509
TCONS_00006853 other upstream 659768 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 1196294 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 1791385 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 1795937 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 1971798 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006865 other downstream 136724 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 1968369 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 2183015 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 3588302 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 3591039 30974771 ~ 30974892 (+) True XLOC_003550

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_04111278_04162816.mRNA True 5821 mRNA 0.46 19 CI01000306 4110793 ~ 4163844 (+)