RNA id: XM_039824238.1


Basic Information

Item Value
RNA id XM_039824238.1
length 2758
RNA type mRNA
GC content 0.47
exon number 12
gene id sdr42e2
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12817115 ~ 12841345 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgccaaaaagcattgttaccacagagaaataatctaccaaacacaaatttataAAAGGGTCTATACCAGGGGCCGGGCCATAAATCATAAATCTGTCCGTGGCTTTAGGCTATTTATTGATATAGTTTCATATCAGATTATTTAAATGGAATAGTTTATTTGACATTAATGTATTACACTGAattaacaatgtaactgtagccATGAGTAAAAGCGACCCGTTCCTCTATTTGTCTCCCTCCCAGCCATCCACCATAGCTCCTCCCACTTCCTTATTTCCAATTTAAAATAGCCTACTAATGAGCACTGTCTATGCTCATGAACCTTCTTCCCCCTCCATGACTTCCCCAGACCCGCCAACGCTAATTTAATCATCTTTAGCCTATTATCATTGAACCATTAATATTACGTAGGCTAGTATTTTATCAGCTTTTGTAAtcaaaatacaacatttttcttttaatagcttaattattgtctattttaacgttaggcctactgtaggctatttgtttaaactttttttttttttttatatagcctTAAACACTTAAATCGTGTAGCCTGGCCTAGCCTACTCTTGGGAGCAATCCTTGTCTCTCTTGTGGCAGTGCCAACTGTATGGAATCTGTGGGGTTAAGCTGGTTGTTTCACTTTAATGTGAAGTTAAAGGGAACCACATTAAATGTACTTGGGCACTTAATAAGGGGCATGGAAGGTTTCTGCTCGTCCACCTGATGCTACAGGAGCTGGAAACACGATCCTCACTGCAACGGGGCTGCGTCCTGCATCCAGACATTACGGTAGGTGGGTCCTCTACAGGTGAAGGTACAGGGGATGAAATGGGACGCGTCAGGAGCCACCACGAGAGGAAAGGGCATGTAGCCTACCTTATAGGCTGAATTATTTCATGAGCCAACGGGCACAGGTATGGATGTGAGAGATCGAAAGGAATGTTAagGACATCTATGGAGCTGTGCGGTCCCAACATGAGTGAGACTGGAGGCTCTCTCTGCCAGATGAAGCCGCTTCCCTGCCACAGTGTCCCCCTTTGTCGCCTGCAGGCCAGCGGGCACCACATGCGTAACTTCCCCCACCAGCCATGGCTCAACCACCCGGCCCCGGCCGTGGCCTCCAGCCCGGCCGTGGCCACTCGCCACAGGGTAAGTGGAGCCGTGGCAGCCAGCTGCAGCAACCCAGAGTGTGTGGTCTCCAGACTGGGAGAGGAGGCCGCACTGGCACCACGCGTCTCCACAGGAAAGGTGGTGGTGACAGGAGGAGGGGGATACTTTGGGTTCAGGCTAGCGAGAGAACTGGCCAGTCAGGGGATGTCGGTGATCCTTGTGGACATTAACATGCCTCCCTGTGATATCCCTGATGGAGCGATCTTCTATCAGAGTGACATCCGGGACTATTCTTCCCTCTATAAGGTGTGTGAAGGGGTCGACTGTATATTCCACACAGCGTCTTACGGCATGTCTGGACCAGAACAGCTGAAAAAAGAGCAGGTGGAGTCAGTCAATGTTGAAGGGACCAATAATGTCATAAACGTGTGTAAGGAGAGGAGCATCCCCAGGCTTGTGTACACCAGTACCATCAATGTGGTGTTTGCTGGGAAACCAATTGAGGAGGGTGATGAGGTCTCGGTGCCGTATGTGCCCCCCGACGTaCACATCGACCACTACTCCAGAACCAAAGCGATTGCAGAGCAGATGGTCCTCTCTGCCAACGGATGCTCCCTGAAAGGTGGAGGCCTCAGGCTTCGGACCTGCGTCCTGCGGCCCTGTGGCATCTACGgaccagaggagaggagacacctCCACAGAGTGATGgtgaaTGTGGAGCGCCGGCTGTTCAGTTTCAGATTTGGTGACCCCCGGGCCAGGATGAATTGGGTACATGTAAATAACCTGGTTCTGGCCCACACGCTGGCAGCTGAGGCTCTCACACTGCAGAGGAGCTGTGTTGCTAGTGGACAGGCCTATTTCATTAATGATGGAGTTTCAGTCAATCTGTTTGAGTGGTTGACACCTTTGTTTGAAAAGCTGGGCTACAGCCGACCGTTGATAAACCTGCCTGTTTCACTGGTCTATTTAGCAGccatcctggttgAATATTTGCATGTAGTTCTGAGACCTGTGATAGAAGTGCCTCTCCTCTTTACCAGAAGTGAGGTGAGGAGCATAGCTGTGAGCCACACCTTCAAGATCGACAAGGCCCGTCAAGAGCTGGGTTACTGTCCAAAGCCCTACAGCCTAACGGACTCTGTGGAGCAGTACCTGAAGTCCAGACAGCCTCGCTCCAGCTTGGCTCTTTTCAGCCTCTCCTGGACCTCCCAGCAGCCTCAAcacctcctcctgctgctgctgatgggcCTCAGCTTGCTGCTACTGATGCTATCCTGCATATTCTGTCAGACCTAAACTATACTCACTGGAAAAGTACTGGATGGACAGCTGCACAATAAGCTGTTTCAAATTTGTTTGGAATTTAAATGTTTGATGGTGTATTCTCACCACATGTGACGTATTAATGAAGCCCACCAGATGCAATAAAATATGCCCTAAAATAAGTCTTCAAAATGTCAGGTTATATAATAATTTGTTCCACCTTCTTGATGTTGGTATATATCTGTCTGATTTCCAAATGATGAAAACTGAGTTATGTAAATGTTAGTGATTTATCAACAGTTTGAATTTatgatttcattaaaaaaaatctaactttGTACTACAAATATTATAATTTTAAATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209272 lncRNA upstream 2230 12782774 ~ 12827577 (+) False G154447
TU209270 lncRNA upstream 21988 12782774 ~ 12807819 (+) True G154447
TU209223 lncRNA upstream 94895 12734683 ~ 12734912 (+) True G154410
TU209192 lncRNA upstream 260955 12566974 ~ 12568852 (+) True G154385
TU209182 lncRNA upstream 306135 12475767 ~ 12523672 (+) True G154379
XR_005641886.1 lncRNA downstream 48075 12889419 ~ 12904818 (+) True LOC120574706
TU209328 lncRNA downstream 138909 12980253 ~ 12981635 (+) True G154494
XR_005641888.1 lncRNA downstream 150559 12991903 ~ 12995560 (+) True LOC120574709
TU209410 lncRNA downstream 186788 13028132 ~ 13034382 (+) True G154535
TU209430 lncRNA downstream 276050 13117394 ~ 13117721 (+) True G154555
XM_039824239.1 mRNA upstream 21911 12782750 ~ 12807896 (+) True mosmoa
XM_039824235.1 mRNA upstream 48362 12774893 ~ 12781445 (+) True LOC120574126
XM_039825718.1 mRNA upstream 55667 12766625 ~ 12774140 (+) True si:ch211-256e16.3
XM_039825719.1 mRNA upstream 55667 12766657 ~ 12774140 (+) False si:ch211-256e16.3
XM_039823972.1 mRNA upstream 64145 12761621 ~ 12765662 (+) True anks4b
XM_039825987.1 mRNA downstream 12685 12854029 ~ 12859158 (+) True mfsd13al
XM_039825365.1 mRNA downstream 23591 12864935 ~ 12872915 (+) True LOC120574877
XM_039825068.1 mRNA downstream 82026 12923370 ~ 12931320 (+) True proza
XM_039825069.1 mRNA downstream 97340 12938684 ~ 12952238 (+) True gprc5ba
XM_039825070.1 mRNA downstream 97341 12938685 ~ 12952238 (+) False gprc5ba
TU209004 other upstream 714615 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 1755981 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2076909 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 2488184 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 2763065 10065460 ~ 10066742 (+) True G153433
TU209291 other downstream 2079 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 175642 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 927675 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 927675 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 927675 13769019 ~ 13775553 (+) False LOC120573994

Expression Profile