RNA id: XM_039824439.1


Basic Information

Item Value
RNA id XM_039824439.1
length 7506
RNA type mRNA
GC content 0.51
exon number 33
gene id cacna1ia
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10418018 ~ 10575177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCTGAGAATTCTTCAACGAGACGAGGTTTTGACGCACCGGAGATAAATGAATAAGCCCATGGAGCGTGGGAATATAGAAAATATCAACTTTTTTCTGCATCTGATCGCTCTAAGTGGAGGACATTTGTAGACATTTGTGGTTATTCTTTACCCATGGATTTGTCAGAAGCGATCCGTGGGTAAACCTTCGTGGGATATTTTGGCTGCATGAAGAGGCTGGCTTGTTGAGGCGCCCCTCCATCGCGTATTCCACCGGGAGGAGAACTGGGCGCATGGTAAAGTGAAGCATATACATTTTAGTATTTTAGCCTGCAGGAGATTAACTGTTGCAATTGAGCTTGAAAACAGGCACGCCTTTTGGATACAGCGTCTGGGAATATCAAGTTAATGAGCTCTGAAATTGGTGTCGGAATGGTCTGAAAAGATGTGAAGTGTTCCTTGTGCCAATTTGTAAATGGAAAAAAGAAGATGCGTTGTAAAAACATGCTAGATTGGACAAATATTTGTCTCCTGCTTCGTgggatttttgtttttgcagtgtGCTCAGTCAACGTGACCATGGTCAACAAAAGTGTTTCCAAATTCTTTAGCGCATACAGCTTAAAGTAGAACTCaaaattatacattttctttGACATTTACTGGCCCGAAATGGTTGTTTATGAGCCCCAAAATTAAACTTGgcgggtaaaaaaaacaactgagaaTTGCcgtttgattaattttttttttgctttctggaAATGTGAGTCCAGTGGAGACCAGTGCGCACCACACAGTCGCCAAGGCTGCAACGCACAACCCAATTTTCCATCGGGGAACCGGGCTTATGCATCGCAGCATCGTAACGACGTCCTCGCCTTTTCTCGCCGAAATGCCTCCGTGTGCACCGATTCCATAACTGGCCAGTGGATAGTAATTCTCCATGGTGTTCACCGGCCAGGTGTCTCGGATAAGGCGAAACCTTGGCTGTTTTGTTCAGTAAATCCTGGACACACCTTTTTTAATGTCAGTCAAGATCTCGGCTTGGTTGCCATGACGAGCGAGGAGTGTCCTGTGCCGCTGGGGAGCATTTCCTCAGCAGGGCCAGGGCAGAGTGAGGAATACGGCTTGGCGCAGGCTGATGACATCATTGAGGAAGTGGGTTCAGGTGATGACGTCAGTATCGGCAGTGACCTAAGCACTCTTGTGTTGCCCTACCCAGAGCTGGCACCTGTGGTCTTCTTCTGCCTAAAGCAAACCACCTGTCCTCGCAACTGGTGCATCCGTATGGTCTCCAGTCCGTGGTTCGAGAGGATTAGCATCATGGTGATCCTGCTCAACTGTGTGACACTGGGCATGTACCAGCCCTGTGAGAACATCGACTGCACCTCGGACCGCTGCCAGATACTGCAGGCCTTTGATGCATTCATCTACATCTTCTTTGCGTTGGAGATGGTGGTAAAGATGGTGGCTCTTGGGATCTTTGGCCGCCGCTGTTACCTGGGAGACACCTGGAACAGGCTGGACTTCTTTATCGTCATGGCTGGGATGGTAGAGTACTCACTGGACCTGCAGAACATCAACCTGTCGGCCATTCGGACAGTGCGGGTCCTTCGGCCACTCAAAGCCATCAACAGAGTGCCAAGTATGCGTATCCTGGTGAACCTGCTGCTAGACACTCTACCCATGCTAGGCAAtgtgctgctgctctgcttcTTCGTCTTCTTCATCTTTGGCATCATCGGCGTGCAGCTGTGGGCGGGGCTACTGAGGAATCGCTGCTACCTGGAGGAGAACTTCACCCTCTCTTCAGGTATGACCCCGCCTGCTCCGTACTACCAGCCTGAGGAGAATGATGAACGCCCCTTCATCTGCTCCCTGGCGTCCGATAATGGCATCATGTCATGTGCCGATGTGCCGGCCAGGCGTGAAGGAGGACGCACATGCTGCCTGGACAGGGAGGACGCGCTCCACAGACAGTCTCTGGGCTTGAGTCCTGAGCCACTGGCTAACGGTAGTGGTGCCGGTGAAGCAGTGGGTCTTTGCATCAACTGGAACCAGTATTACACTCGATGCCACACAGGAAGTGGTAACCCCCACAAAGGTGCCATCAACTTTGACAACATTGTCTACGCCTGGATCGTAATCTTTCAGGTGATCACTCTGGAGGGCTGGGTGGAGATCATGTATTATGTAATGGATGCCCATTCCTTCTACAACTTCATCTACTTCATTTTACTCATCATTATTGGTTCATTCTTCATGATCAACCTGTGCCTGGTGGTTATTGCCACCCAGTTCTCGGAGACCAAACAGCGGGAACACCAGCTGATGCAGGAGCAAAGGGCGCAGTGCCTGTCCTCCTCCACCCTGGCCAGCATGGCTGAGCCGGGAGATTGCTACGAGGAGATATTCCAGCTGGTTTGCCATGTCCTTCGCAAGGCCAAGAGGAGATCGGCAGCTCTCTACTACACTCTGAGGGGCAAACCCCCACCGCCTGGTGGAGGCAGGGGTTACAGGCGTGGTGGAGGGAATGTGAACGGAGAGCGGCATCATTCCAGGCACCCAAAAACATCTCACTGTCCGCACCAGAGCAAGCAAGACCACAGCTCTCAGCCACTAGCCAACTCCATCAGTCTGCCTGTCCCTCAGAACCCTGAGGACTGCCCTATATGTGCATTATCACTGAAAGAGGGGGCGAGGGCTGTGGGAGACTCCGCCAACAGGGAGGAAGATAATGAGGATGCAGTGAAAGAGACGGGCAAGGAGGAGAACCATCTAGAAGAGaggggagatggagagaggaagaggaagaggacatGCTTTGGATATTGTAAAGACATTTGGAATGATATGAGGAGGAAACTTTGGGGCATTGTAGAGAGCAAGTACTTCAGCAGGGGCATTATGATCGCTATTCTCATCAACACCATCAGTATGGGCATCGAGCATCATAACCAGCCCGAAGAGCTGACCAATGTCCTGGAGATCTGCAACATTGTCTTCACCAGCATGTTCACCTTGGAGATGGTCCTCAAGCTGACTGCTTTTGGCTTCTTTGAGTACCTGAGGAACCCCTATAACATCTTTGATGGCATTATTGTCATCATCAGtgtgtgtgagatcaTCGGCCAGGCAGACGGCGGCCTGTCAGTGCTGAGGACCTTCAGGCTGCTGAGGGTCATTAAGCTGGTGAGGTTCATGCCTGCGCTGAGGCGGCAGCTGGTGGTGCTGATGAAGACTATGGACAACGTGGCCACTTTCTGTATGCTGCTTATGCTCTTCATCTTTATCTTCAGTATCCTGGGGATGCACATCTTTGGTTGTAAGTTCAGTCTGAAGACAGAGGCTGGAGACACAGTGCCTGACAGGAAGAACTTTGACTCCCTGCTCTGGGCCATTGTCACAGTCTTTCAGATTCTGACTCAGGAGGACTGGAACATGGTGCTGTACAATGGGATGGCATCCACCTCGCCCTTTGCTGCTCTCTACTTCGTAGCTCTTATGACATTTGGAAACTATGTGCTCTTCAATTTACTGGTGGCCATCTTGGTTGAGGGTTTCCAGGCTGAGGGTGATGCAAACCGCTCTTACTCGGACGATGACAGGTCTTCCTGTAATTTTGAGGAGAATGATAAGCAGAAAGACTCTCTGCATCTCTCAGACCCAAAGATCTGTACATTAACCCCTAATGGGCACCTGGACTTGTCCCCACTGGCCCATGGACTGTTTCCAGGAGAAAGGTTGACCTTTGCTCTTGGTTCCAGGAGGAACAGTGTTATTTCTCTGGGCAGGGCCAACTTGGAGCAGAGGGCTATGTATCCAGGTCGAAGTTACCACAACTGGGGCCGCCCTCTGCCTACCCAGCCTCAGGCCTTGTGGGCCCGTCGTTCCAGCTGGAACAGCCTGGGGGGATGCCGcccctgctcctcctcttctccctccgCTAGTCCAGCCTTCACCCCCACCTCTGCAAGGCCCTTCTATGGCTATGGCCTGGGGGGTCTTGGTGGAGTAGTCGGAGGAAGCCTTCGTATCCGGGGTCCCCGTGCCTCTTCATCCCCGCACCGCCACCTCCATCATGTCCACCCGGATGAGGAGgagtctctcctctctcctcccgcTGTTGCTCCACGCTCTCTTCACCTTCCCCACCCTATGCTCCCGGGCCACTTTGTACCCAGGAGGGACCGCAGAGCTCTATCGCTCGAGCTGCCCCACCTACTGCAGGTCCCAGGACCCCCGCACCCTCCACTGCCACCACACCACCCGCTGCCCTCTATTAAGCTCCATGCTCATCACAGGAAGAAGAGCTTCTCTGGGGGGATGGTAATCAGTGGAGGCGGTGGTGGCAGTGGGCTAGACGGTCTGGGTGGCTTAGGAGGGGTACACCAAGACTGTAATGGGAAAACTCCTCAGCATCTCCAGCCCCCTCCTAGACACTCTGGAGGGGCGAACCCCCAAAGCCAACTGATGGCCGACGTCTTCCCCCAGGTTAACACACGCAGCAAGGACCGGGAGGACCTAGACGATGACATTGAATATAGCTTGTGCTTCCGCATCCAGAAGATGTTAGAAGCGTACAAACCAGACTGGTGTGAGAGCAGAGAAGACTGGTCCGTATTCCTATTCTCCCCACGGAACAAGTTCAGACAGATATGCCAGTCCATCATAGCCCATAAGCTGTTTGACTATGTGGTGTTGGCCTTCATCTTCTCCAACTGCATTACAGTAGCTCTGGAGAGGCCCAAGATACTACAGGGCAGCTTGGAAAGAGTATTTCTCACCATCTCCAACTACATCTTTACTGCCATCTTTGTGAGCGAGATGACACTCAAGGTGGTTTCCATGGGTTTGTATGTGGGTGAGCAGGCTTATCTGCGGAGCAGCTGGAACATTCTGGATGGCTTCTTggtttttgtgtctttgattGACATTGTCGTGTCCATGGCGGGTGGGGCCAAGATCCTTGGTGTGCTTCGAGTCCTCAGGCTGCTCAGAACATTGCGTCCCCTCAGGGTGATTAGCAGAGCTCCAGGTCTAAAGCTGGTAGTGGAGACACTCATCACCTCCCTCAAACCCATTGGCAACATTGTTCTCATCTGTTGTGCATTCTTTATCATCTTTGGCATTCTTGGGGTACAGCTGTTTAAAGGCAAGTTCTTCTACTGCTTCGGCCCTGACGTGAAAAACATCACCAACAAGTCTGATTGCCTGCAAGCCAGCTACAAGTGGGTCCACCATAAGTACAACTTTGACAACCTGGGACAGGCTCTGATGTCTCTGTTTGTGCTCGCCTCTAAGGACGGCTGGGTCAACATTATGTATCATGGCCTGGATGCTGTGGCTGTGGACCAACAGCCGGTGACCAACAACAACCCGTGGATGCTGCTGTATTtcatctccttcctcctcatcgTCAGCTTCTTCGTCCTCAATATGTTTGTAGGCGTTGTGGTGGAGAACTTCCACAAGTGCCGCCAGCATCAGGAAGTGGAGGAGGCCAAAAGGCGTGAGGAGAAGCGTCAGCGGCGCATggaaaagaagaggagaaAAGCCCAGAAGCTGCCCTACTTTGCCAGCTATGGCAACATACGCCTGATGATCCACACACTGTGCACAAACCACTACCTGGACCTCATCATCACCTTCATCATCTGCATCAATGTCATCACCATGTCCTTAGAGCACTTCAATCAACCTCATTCTCTGGATCTCGCCCTGAAGTACTGCAACTATTTCTTCACCTCCATGTTTGTGCTGGAGTCAGTGCTCAAACTCATCGCCTTCGGCTTCCGCCGCTTCTTCAAAGAGAGGTGGAACCAGTTGGACCTCGCCATTGTGCTTCTGTCAGTGATGGGGATCACCCTCGAGGAGATCGAGATAAGTGCTGCCTTGCCCATCAACCCCACAATCATCAGGATCATGAGAGTACTGAGGATAGCACGAGtgcTGAAGCTGCTGAAGATGGCGACAGGAATGAGAGCCCTGTTGGATACAGTGGTCCAAGCCCTGCCTCAGGTGGGTAACCTGGGCCTGCTCTTCATGCTGCTGTTTTTCATCTACGCCGCCTTAGGAGTAGAGCTATTTGGAGAACTTGTTTGCAATGAAGACTACCCTTGTGAGGGAATGAGTCGTCACGCTACCTTTGAGAACTTTGGCATGGCCTTCCTTACCTTGTTTCAAGTCTCCACGGGCGACAACTGGAATGGCATCATGAAGGACACATTGCGGGAGTGCCCACCAGACCATGGCACTGATGTGGACTATGCCTGCAATCCTAGCCTTCAGTTTATCTCGCCCATGTACTTTGTCTCCTTCGTGCTCACCGCCCAGTTCGTGCTCATCAATGTGGTGGTGGCCGTGCTGATGAAGCACCTGGACGACTCCAACAAGGAGGCCCAAGAGGAGGCGGAGATGGATGCAGAAATTGAGCTGGAGCTGGCCCAGGGCACCCTCTGTTGCATGGGCGCCCCCAGTTGCGGGGGTGGGAAGGTGGAGAAAGGACTAGTCGCTGCTGGACCTGGAGGCACAGCGGGGGGGAGGGATAGAGGAGGTCCGATTGGAGAGAAGGGAGAAGGAGTGAGGAAGATGCGACATTCAGCAGGCAGTGTGCACCCAGGAGCGTACAGCTCCCATGACTCCAGCCGGACCCTATACTCACCAGCACAAATTTTGTGAGAAGAAAGGGAGGGTAAGGAGGGTCAAACATCTACACAAAGAGAGGGAATAGTAAGATAGGCATATACCAggcaaataaaaggaaatagaCACTAAGCTGTGTCTTAATTACAACATTGCACAAGTgcaattatgtttaaaaaaaaaatcaatgaataTGAATGTAAACACATTGGGCTGGAATTAAAGGCATTTTCCAAAATGAAACCAAACTACTTAAGTGATATTAAATGAAAGCCAAGGCTTAGCCatatatttccattttttttttaaagttttgtcTTCCTTCACTGTAGTCATAGCAACCTATGTTGTCAGCAAGCAGATATGAGCAACTTTAATGGCTTTCTCAGTTTTTCAGCTTTCAGTAGAGTTTGCAGACACACGTGCatggttacattttttaaatgatcattTCACTGTCTACATCTGTGCGTGAGAGTGGATGGTCTCTCATTTCTATTCGCAGTCTGACAGCAGAGACACACGCTTCCATTATGAAATCGCTAATAATAGTCTGCGATATCGGTGCAGAAACACATAAAGATGACTCATCGGCTGCCATAAAGAGTCTCACCGTTGTAGAGCTAAAGTTGGCTGTGTGGAGACATTTTTAGCTCACTGTGACGGAACTTAATGCAGACCATGGAGAACACATTGGCAGcatcctccccccctctctcgcTATCTCTTCCGATCTCCCCCCTCTTATTCTCTGTCTCTTAAGTGATGCAATAAGGGATCTGGCAGAACAATGCAATTTATTCGGAACAcaggtcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208227 lncRNA upstream 18665 10399125 ~ 10399353 (+) True G153684
TU208163 lncRNA upstream 182079 10169942 ~ 10235939 (+) True G153640
TU207800 lncRNA upstream 464663 9950608 ~ 9953355 (+) True LOC120574664
XR_005641879.1 lncRNA upstream 467146 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA upstream 467146 9948607 ~ 9950872 (+) False LOC120574664
TU208283 lncRNA downstream 42828 10602417 ~ 10602964 (+) True G153740
TU208291 lncRNA downstream 50002 10609591 ~ 10638479 (+) True G153746
TU208356 lncRNA downstream 149779 10709368 ~ 10709629 (+) True G153799
TU208383 lncRNA downstream 227273 10786862 ~ 10818172 (+) False G153817
TU208380 lncRNA downstream 253139 10812728 ~ 10818172 (+) True G153817
XM_039826260.1 mRNA upstream 19670 10394107 ~ 10398348 (+) True lgals2a
XM_039824224.1 mRNA upstream 65519 10337243 ~ 10352499 (+) True sgsm3
XM_039824223.1 mRNA upstream 65519 10337243 ~ 10352499 (+) False sgsm3
XM_039824225.1 mRNA upstream 65519 10337243 ~ 10352499 (+) False sgsm3
XM_039823676.1 mRNA upstream 131477 10209890 ~ 10286541 (+) False LOC120573826
XM_039825338.1 mRNA downstream 59064 10618653 ~ 10624540 (+) True ankrd40
XM_039825339.1 mRNA downstream 68857 10628446 ~ 10632635 (+) True wfikkn2a
XM_039824731.1 mRNA downstream 266914 10826503 ~ 10828557 (+) True LOC120574456
XM_039824734.1 mRNA downstream 269744 10829333 ~ 10832063 (+) True LOC120574457
XM_039825944.1 mRNA downstream 286155 10845744 ~ 10854576 (+) True LOC120575243
TU208172 other upstream 76395 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 351276 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 443445 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 479414 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_844 other upstream 481737 9935671 ~ 9936281 (+) True LOC120574414
TU208368 other downstream 192571 10752160 ~ 10752898 (+) True G153808
XR_005641865.1 other downstream 504833 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 1526272 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 2283834 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 2457397 13016986 ~ 13020668 (+) False LOC120574968

Expression Profile