RNA id: XM_039824603.1


Basic Information

Item Value
RNA id XM_039824603.1
length 5275
RNA type mRNA
GC content 0.53
exon number 31
gene id abca3b
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13796728 ~ 13827791 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGAGTACATTAAATTATACGGATGAGACCCCTGATATATCACGAAAAGGATGTAGACTGTAGACTCCGAGATGAATAGCACCAGTGTGGAATTCAGTACCACCACAGTAGAAGGCTGACTGGACTGTGTCCCTTCTATCACTCAAAATGGCTATTGTGCGACAATTTGGACTTCTGGTGTGGAAAAACTATCTTCAGCAGAAACGTCAAATCCTGGTAACTCTGGTGGAGATACTCCTGCCCCTGCTCTTCTCCGGCATCCTCATCGTGCTACGTCAGAAGGTGCCTTTTAAGGACTACCCAAATGCCACCATCTATGAGAGCTACGCCGTTGACACGCTACACAGTAGATTGTCGCACCGCTTGCAGCTGGCTTACGTGCCCGGTAACTCCAGTGTGGTACGTCAGGTGGCCGAGGATGTGCGAGGGAGCCTGGCTCTCTCTTCAGtgcGTGGCTTTGAGACGGAGGAGCAGTTCGAGGACTATGTGAGAAATGACCCTCTGTCAGGAAAGCTGCTGGCTGCTGTGGTGTTTGAGCACCCCTTCACCCATGATGATGAACCTCTGCCCCTAAAGGTGAGTTACCACCTGCGTTTCAGTTTCACCCCACGCAATGCCCCACCCAAGGAGAGGTCGGAGCTGAACCCCAACAGTGACCTGGACTGGCACACGCTCAGCCTCTATCCCCTCTTTCAGCTGCCAGGGCCGAGGGAGCAGTATGACAAGGAAGGGGGCACGCCTGGTTATTTCCGAGAGGGATTCCTTGCTGTACAGCATGCAGTGGACCTAGCCATCATGCGCTCTTACAACAGAACGTCTGCTGCCTCTTTGCTGGGACATATCCGAGTGGTCCTGTCGCGGTTTCCTTACCCTGCCTTTATATATGACGTTTTCATCCTAGCCATTCAGAACCAACTGCCCCTACTACTGGTGCTCAGTTTTACCTACACCTCCCTCAACATTGTACGATCTGTGGTGCAGGAGAAGGAAAGGAAGCTCAAGGAGTACATGAGGATGATGGGTCTCAGCAACTGGCTCCACTGGAGTGCCTGGTTCCTCatgttcttcctcttcctctccatttCAATCTTTTTTGTCACTCTGCTCCTTTGTATCCAGGTGAGCCCTAACGGAGCAGTGCTGACCTACAGCGACCCCACACTTGTCTTTGTCTTCCTGCTCGCCTTCACTGTGGCCACCATCAACTTCAGCTTCATGATCAGTGCCTTCTTCTCACgagCAAatgtggcagcagcagcaggcggcTTCATCTATTTCCTGAGCTACCTGCCTTATTTGTTCCTGTGGCCACGCTACGACCTGCTGAGCCATGCCCAGAAGGTGTCGGCCTGCCTCATCTCTAACGTGGCCATGGCCATGGGAGCTCAGCTCATTGGAATGTTTGAAGGCAAAGGAACGGGAATCCAGTGGTCAAACTTGTTTGACTCTGTGACGGTGGACGATGACTTCTCCCTGGCCCAGGTATTAGGCTTGCTGCTGTTTGACTCTGTCCTCTATGGGTTGGTGGCCTGGTACATGGAGGCAGTTTTTCCTGGAGAGTACGGAGTGCCTCTACCATCTTACTTCTTCGTACTGccTTCATACTGGTGCAGCAGCCCCCGCATGGCTTTGGTGaatgagaaagaggaagaggaggatgcaGAAAAGGCTTTGAAAGGGGAGTTCATAGAAGAGGAGCCAGCTGGACTAGTCTCCGGGGTAAAGATTAAACATCTCGCTAAGGAATTCAAAGTAGGCAACAAGACACGGCAGGCTGTGCGGGATCTTACAATGAACATGTTTGAGGGACAGGTCACGGTGCTGCTAGGACACAACGGTGCTGGGaagacaacaacactgtccaTGTTGACAGGGCTGTTTCCTCCCACCAGTGGCAGGGCCTATATCAACGGTTACGACATCTGTCAGGACATGGCTATGATCCGCCGCAGTCTGGGACTCTGTCCCCAGCACGACGTACTGTTTGATAACCTTACTGTCAGAGAACACCTGCTCTTCTATGCTCAGCTGAAAGGCTTCTCCaaagagaagattccagatgAGGTAGACAGGACTATCCGTATCCTGAATCTTGAGGACAAGCGACAGGCTCGCTCCAAGACCCTCTCTGGTGGCATGAAGAGGAAACTCTCCATTGGCATTGCCCTCATTGGAGACTCCAAGGTGGTGATGTTAGATGAGCCCACATCAGGTATGGACCCATCAGCTCGACGTGCCACCTGGGACCTTCTGCAAGGGGAGAAGCGCGGTCGCACCATCCTGCTCACCACGCACTTTATGGACGAGGCCGACCTGCTCGGTGACCGCATCGCCATCATGGCAGGAGGAGAGCTGCAGTGCAGCGGGTCACCACTCTTCCTTAAGAACAAATATGGTGCTGGTTACCACATGGTGATAGTAAAGGATGCTCTTTGTAACGTGTCCGAGATCACCCGCCTTGTCCACATGTATGTTCCTAATGCCACACTGGAGAGCAGCGCGGGGGCAGAGCTGTCTTACATCTTGCCCAAAGAAAGCACCAGCAGGTTTGAGCTGCTGTTTGCTGAGCTGGAGATGAACAGAGAGGAGCTGGGCATCGCCAGCTATGGAGCTTCAGTAACCACTATGGAAGAGGTTTTCCTCAGGGTGGGAAAGTTGGTGGATTCTAGTTTGGACATCCAGGCAATCCAGCTGCCAGCCCTGCAGTATCAACATGAGAGACGCTCCCATGACTGGGCCACAGATgatgccagcagcagcagcggcatgACCGATGTTACCGACTTCACAGACAGCGGCACGCTCATCTCAGAGGACTGCTCCAACATCAAGCTAAACACTGGGGCCAGACTACACCTGCAACAGTTTTATGCCATGTTCCTGAAGAGGGCCCTGTACAGCTGGAGAAACTGGAAGGTGATGGTGGCTCAGTTCCTGGTCCCTTTGGTCTTCACCGTTGTGGCTTTAGTTGTGGCACGCACCATTCCCAATCACCAGGACGCTCCTCAGCTGAGGCTGGCACTCAGCCGCTATGGTTCCACCAGGGTCCCTGTGGCTCTGCAGCCTAACGTAGGTCCCCTGGCCTCTGCCCTGGCAAATACATACAGTTCACAGCTCTCTGCCCAGCTTGGCCAGCTCATCAATATCACAGACTTCACTGATTTCATCCTGACCCAGGCAGAGGAAGAAGGCGGCAGCTTTAATGAGCGCTGTGTGGTGGGTGCTGCTTTCCGTGGCAGCAGCAGCCGATTTGCAGAAGCAACAGCCTACTTCAATAATGAGGGCTACCATACACCCGCCACGTCCCTAATGTTGGTGGACAACGCTCTGTTCAAACTTCTAGCAGGTCCGAATGCTTCCATCCAGACGGGCAATTACCCCATGCCACGCAACCTGTCTGAGATCGCCCACAGCCAGCTCAACGAGGGAAAGACAGGCTTCATCATCGCCATCAACCTGATGTACGGTATGGCCTCCCTGTCTAGCACATTTGCCCTCCTGCTCGTAACAGAGTCCTCTATCAAGTCCAAGCATGTCCAGCAGGTCAGCGGTGTCTACCTGTCAAACTTCTGGTTTTCTGCCTTGCTGTGGGACCTCGTCAATTTCCTGCTGCCCTgtctcctcatgctgGTGGTGTTTCAGGCATTTGGAATCAAGGCTTTTGTAGACAACAACCACCTGGTAGATGTGTTGTTGTTACTGCTGCTGTATGGCTGGGCTGTTGTGCCTCTCATGTACCTGCTCAGCTTCTTCTTTTCCACTGCCGCTACTGCCTACACACGCCTCACCATCTTCAACATGATCTCTGGCACGGCCACCTTTCTGACTGTTACCATCATGACCATCCCAGAGTTGAACCTGCAGGAGATGTCGCACTTACTGGATAAGGTGTTCCTGATCTTTCCAAACTATTGCCTGGGCATGTCCTTCAGCCAGTTCTACCAGAACTACGAATTCATCTCGTTTTGCACTTCCAGTCCAATCAGCGAGACAGTGTGCAATTTCTTAAACATCACGTACCAGAAAAACTACTTCTCGATGTCGGAGCCTGGTGTGGGACGCTTCCTCGTGGCCTTCTCACTGCAGGGTGTAGTCTTTATTATTCTGCTGTTTGTCATCGAGCTGCAGTGTGTCCACACTCTCCGGCGATTCCTCACCTCCCTGGGCAGAAGACGTAAACAGgtaCCTCTTATAGAGGATGCAGCACTGCTTCCAGAGGACAGGGATGTGGCCGAAGAGAGGAAAAGGGTCCTGGAGTGCCAGCCAGTGTTAGAGTCTATGGTTGGCAGTCCCCTCATACTACAGGAGCTCAGCAAGGTGTACAGCAGCGGGGAAAGTCTTCTGGCTGTGGACAGGCTGTCTCTAGCTGTAGGGAAAGGGGAGTGTTTTGGCCTCCTGGGCTTCAATGGAGCAGGCAAGACAACAACCTTTAAGATGCTGACTGGTGATGAGAGCGTTTCCTCCGGGGACGCCTACATTGATGGATACAGCATCTTGAGGGACATTAAAAAGGTGCAGCAGCGCATTGGTTACTGCCCTCAGTTTGATGCCGTGTTGGACCACATGACAGGAAGAGAAACTCTGAGTATGTATGCCAGGCTCAGAGGAATACCAGAGAGGTATGTGTCTGGCTGTGTGGAGAATGTCTTGAGGTCGCTGCTGCTGGAGCCTCATGCCGATAAACTGATCCGCAGCTACAGTGGCGGTAACAAGCGGAAGCTGAGTGCAGGCATGGCTCTGATTGGTGGGCCTCCGGTCATCTTTCTGGATGAGCCTTCGACCGGGATGGACCCCGTAGCCAGGAGGCTGCTGTGGGACGCTGTTACACGCACACGGGAGTCTGGAAAGGCCATAATCATCACTTCTCATAGTATGGAGGAGTGTGAGGCCCTGTGTACCAGGCTGGCAGTGATGGTCAACGGTCAGTTCAAGTGCCTCGGGAGTCCCCAGCACCTGAAGAGCAAGTTTGGCAGTGGCTACACCCTGCTGGCAAAAATACACATAGAGGCTGAGTTGGAGGACAGTGACCTGCAGCTTTTTAAAGACTTCATTGAAAGTACCTTCCCAGGAAGTCAACTAAAGGATGAGCACCAGGGAATGGTGCACTATCATTTGACTGACAAAACACTTACCTGGGCACAGGTGTTTGGCACTTTGGAGGCAGCCAAAGAGAAATACCAGATTGAAGACTACTGCGTGAGCCAGATATCACTGGAGCAGGTGTTTCTCAGCTTTGCCCAGTTCCAACACTGCACAGAGAGTAGGAGAAAGTAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209634 lncRNA upstream 105161 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 204699 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 303472 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 312615 13484039 ~ 13484718 (+) True G154639
TU209551 lncRNA upstream 321885 13474159 ~ 13475448 (+) True G154634
XR_005641994.1 lncRNA downstream 121041 13946606 ~ 13954723 (+) True LOC120575454
TU209761 lncRNA downstream 224266 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 224527 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 282216 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 282261 14107826 ~ 14241105 (+) False LOC120575155
XM_039823957.1 mRNA upstream 1649 13784836 ~ 13795684 (+) True ccnf
XM_039823953.1 mRNA upstream 18426 13769026 ~ 13778907 (+) False LOC120573994
XM_039823955.1 mRNA upstream 18621 13769022 ~ 13778712 (+) False LOC120573994
XM_039823954.1 mRNA upstream 20074 13769019 ~ 13777259 (+) False LOC120573994
XM_039826243.1 mRNA downstream 7006 13832571 ~ 13838091 (+) True LOC120575447
XM_039826245.1 mRNA downstream 14584 13840149 ~ 13846908 (+) True LOC120575448
XM_039826247.1 mRNA downstream 37946 13863511 ~ 13866556 (+) True LOC120575450
XM_039826246.1 mRNA downstream 41719 13867284 ~ 13884326 (+) True LOC120575449
XM_039825900.1 mRNA downstream 171337 13996902 ~ 14000676 (+) True LOC120575215
TU209660 other upstream 15648 13774701 ~ 13781685 (+) True LOC120573994
XR_005641807.1 other upstream 18710 13769019 ~ 13778623 (+) False LOC120573994
TU209715 other downstream 21574 13847139 ~ 13854286 (+) True G154743
TU210109 other downstream 1155671 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 1160135 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 1166448 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 1310226 15135791 ~ 15139706 (+) True G155088

Expression Profile