RNA id: XM_039824664.1


Basic Information

Item Value
RNA id XM_039824664.1
length 1289
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120574401
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13454492 ~ 13460827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACACTGTCTCTTTAAAGCACCGAGGGAGGCGTGTAGGACGTCGAGCGAGAAGTGGTGCGCTTTAACGGTGTGCGTTCAATGTCTTATGAATGACCGCCGCTGTTTCAGGTTATGTGACATTGTGGCAGTGCAGTACACTTGATGACCAAAGTGAGTTCGGGTAAAggcaagagagagggggagggtcGCTGAATGAGATGTACCCCGGCGGCTGGCCTTTACGCAGAGAGGAGCGCGGCGCACAATTTGGTTTCCTGCGTGGTTAGCAAACAGCCCTTGTAGTCTGTAGTCAGCTCCGTGGATTTGCGTTGGGATCAAACTTTCGCACTGTGAGTGAAATTCAACCTGATCAGCTGAGGAGTGGACTGGCGCTTCTTCCCGTTGTTCATACATCGACAGATTCTGGAGGAATGTGTTTAACTTTAAAGTAGGCCAGCTCCACCTTTATCTGCTCCGTctggacttctttttttttttttttacttcaaagtGCCAAACTAAACTTTTACATCGGACTCTTCCTGCGCATGATGTACACAATTACAAAAGGTCCCAGCAAACTGGTCACCCAGCGACGGACAGGGCCTACTCAGCAGCTTGACAACCAAATAAACGACTTCAAGCACAAGCAAACGTCCTGGAGTATGCCTGACCTTCCTGCACCCAAGATAGTTTTCAACCGTCCCAACGGTAAGAAGTACCATCAGCCTGCTCCGGCTCTCCCTGCAGACAGCCAGCAGGAAGAGAGCTTCACGCCCGCGCACAAGGAAAACGTCAAATTTGTCTATGATGCCTGGCAGGAGGTGGAGCAGCAGGAGGGGGGGTCAGAGGAGACCCAGGGAGCAGTCCACTATAAAGAACCCACTCCCAACCCACACATGCACAactttGTGCCGATAGATCTTGATGAATGGTGGGCCCAGCGTTTCCTAGCCAACATAGACAAGCTATCCTGACACTTCTGGGATGTACGGATCTTGACGGATCGTCAGGCGAGACCTGAAGCAGGATGGCTCGCAGAGGAGAGGCGGCCTGGGCTGGAGGTGTGATGGGTCAAAATGCCCTGATGTGGTTCAAATGGATGGACAGCGCTGGGACGCTTGCATAGAAACCACAGAGAATCACTTCACTTGAACTCTAGCCTGTTTGACTACAATCGATCTCTAAATATTGTCTGCGACAGACTGCACACTTGAGGACGCCCATCTTGGAGTTGAggtttctctcctctttctgcaCTCACAATAGAGATGTCATGTTACTTGCAGTAAAATCGTATTTTCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209514 lncRNA upstream 48798 13356223 ~ 13405694 (+) False G154603
TU209515 lncRNA upstream 75277 13356223 ~ 13379215 (+) True G154603
TU209512 lncRNA upstream 185202 13268919 ~ 13269290 (+) True G154602
TU209465 lncRNA upstream 220171 13234113 ~ 13234321 (+) True G154586
TU209430 lncRNA upstream 336771 13117394 ~ 13117721 (+) True G154555
TU209551 lncRNA downstream 13332 13474159 ~ 13475448 (+) True G154634
TU209556 lncRNA downstream 23212 13484039 ~ 13484718 (+) True G154639
TU209595 lncRNA downstream 31758 13492585 ~ 13493861 (+) True G154661
TU209616 lncRNA downstream 128690 13589517 ~ 13592634 (+) True G154682
TU209634 lncRNA downstream 195188 13656015 ~ 13692172 (+) False vasnb
XM_039824663.1 mRNA upstream 275 13448627 ~ 13454217 (+) True LOC120574400
XM_039825670.1 mRNA upstream 6081 13423545 ~ 13448411 (+) False LOC120575071
XM_039825669.1 mRNA upstream 6081 13423575 ~ 13448411 (+) True LOC120575071
XM_039825501.1 mRNA upstream 428076 13016959 ~ 13026416 (+) True LOC120574968
XM_039825277.1 mRNA downstream 142001 13602828 ~ 13631755 (+) True glis2b
XM_039825278.1 mRNA downstream 162886 13623713 ~ 13631755 (+) False glis2b
XM_039825273.1 mRNA downstream 205582 13666409 ~ 13692303 (+) True vasnb
XM_039825274.1 mRNA downstream 288093 13748920 ~ 13754367 (+) True dnaja3a
XM_039825275.1 mRNA downstream 288102 13748929 ~ 13754366 (+) False dnaja3a
TU209346 other upstream 433824 13016986 ~ 13020668 (+) False LOC120574968
TU209291 other upstream 607895 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 1339300 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 2380666 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2701594 10752160 ~ 10752898 (+) True G153808
XR_005641807.1 other downstream 308192 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 308192 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 308192 13769019 ~ 13775553 (+) False LOC120573994
unassigned_transcript_849 other downstream 308876 13769703 ~ 13769776 (+) True trnat-agu_6
TU209660 other downstream 313874 13774701 ~ 13781685 (+) True LOC120573994

Expression Profile