RNA id: XM_039824986.1


Basic Information

Item Value
RNA id XM_039824986.1
length 1906
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120574573
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14957489 ~ 14961105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACGCAGCGGCTAATCTCATAGAATATGCAAAGCTGCCATCACCAGAGAGGCTGGATGAAGACACAGAGTGGTTTGAGCTAAGTGGATGGCCACAGTATTACAttcacataggctaataataaaattaaatattacaTAAATAATAAGTTTACAGGACAACTACTTCGATGGGACTGCCGGTGAGTTCATTATAACATGGTTCATTAACAACTGAGAAGGTGTGGACAGATGGAGGACTGTCCATGATTTCGCCCGGGGGGGAAAAACGCCGTGGATCCATTAAGTGGACATTTGAACGCTCAGAAATTGGTCGAAACATCCGTCAAGAGCTTGATAATACCCGAGGAAAAAAAGCGAACATTTCGGACAAGGTTTTTACTGGAGTAAATCTACCTGAGTCACCTGTTGGAGCGGAGCTGCTCTCTATCATCAGTCCAGcAGCACTTTTCAAAATCTGCAGTGAAGCCATGGGACCGACCAGTGCTCCAAAAGGATGCGATTCCAGTATCAGCTCCATATATTACAACCTGTGTGACCTGACTACAGtgtggggggtggtggtggaggcCTTTGCTGCTGCTGGTTTGGTGACTTCCTTTGTTCTGTTGGTCATCCTCATGGCCAGCTTACCATTTGTGacagacaagaagagaaagagtATGGTGGTCCTGCAGGCCGGATTTCTGGTGTTTACTCTGGGACTCTTTGGGCTCACTTTTGCCTTCATTGTGGGTCGGTACTCCACCAGCTGTGCTGCACGGAGGTTCCTCTTTGGAGTACTGTTCTCAGGCTGTCTAGCCTGCCTGGTCATGCATGGGTTGTGGCTTGCCCTGCTGAAGCGGAGAGGCCGGGGGCCCAGGAGCTGGATGTTATCCCTGGGAGCCCTGGGTCTGTGGATGGTCGAGGTGATCATCAACACTGAGTGGCTTATCATCACTGTGGTCAGAAGCCCACCTGGAGGTGTAATCATCCCTGACATGTTCTGCAGCATTGCTAACCAGGACTTTGTGATGGCTCTGATCTATGTGATGGTTCTGCTACTAGCTGTGGTGCTGATGGCTGGGCCCTCACTGACACACAAGCACAAGCACTGGCGCCGAGATGGAGCCTTCATCCTGGTCACAGGGCTCTTCACCATGGCCATCTGGGTAGCTTGGACTGTCATGTACATCTATGGGAACAGAGTGGCAGGAAATCCCAGCTGGGACGATCCTACTCTGGCTGTAGCCGTGGTGTCAAATGCCTGGgtgttcctcttcctctacaCCATCCCAGAAATCTGCGTACTAACCCAGGAGGACCCAGACCAGGAGCAGCAATTTGATGAACCCGTTTATCCTGCCAGGAATCTGGTTTATGACAATATCCTTAAGGAGCCGGAGCCACTCCACCAGAACGTATACATGGAAAATAAAGCCTTCACTATGGACGAGCCTCCAACAGTACCTTCAAAGCCAGTGTCTCCATATGGTGCTTATAATGGTCAGCTACGAAGTTGTGTGTACCAGCCCACTGAAATAGCCCTGATTGCAAAGGGTATGACTAAGATGGACCAAGATGCGATGATGCCTCGAGCCAGAGCCCCCTCTCTAAATCCAGGAAGTGGCAGCTCCCAGCCTCGTTCCGCCGAGTCCTCACTGTTTTAAGGACTGTAAAGCGCAAGAAGCTTGAGTCGAGGGCGTCACTTACACAATCAGTTGTTTACAGCTATGAAATCTCCACCAGAGGTTTGTTCTCCCATCAGAGTTCCTTGtatcaaatgttttttgtcCTTGGCAAGAATCTTAAAACATGAACACTGTGGTGGTCAATCTGCAGCAATTACACTTTTTGTGACCTagcttctctcacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210089 lncRNA upstream 3190 14952333 ~ 14954301 (+) True G155032
TU210028 lncRNA upstream 127327 14829502 ~ 14830164 (+) True G154982
XR_005641958.1 lncRNA upstream 218775 14730618 ~ 14738716 (+) True LOC120575161
TU209890 lncRNA upstream 486504 14470512 ~ 14470987 (+) True G154883
TU209888 lncRNA upstream 494028 14463262 ~ 14463463 (+) True G154881
TU210099 lncRNA downstream 6838 14967943 ~ 14968410 (+) False G155036
TU210097 lncRNA downstream 7078 14968183 ~ 14969536 (+) True G155036
TU210103 lncRNA downstream 10147 14971252 ~ 14971468 (+) True G155040
TU210104 lncRNA downstream 10417 14971522 ~ 14971790 (+) True G155041
TU210110 lncRNA downstream 22245 14983350 ~ 14984745 (+) True si:dkey-282h22.5
XM_039826206.1 mRNA upstream 36809 14917820 ~ 14920682 (+) True LOC120575419
XM_039826207.1 mRNA upstream 42690 14908491 ~ 14914801 (+) True LOC120575420
XM_039826278.1 mRNA upstream 57699 14896424 ~ 14899792 (+) True zgc:112148
XM_039823893.1 mRNA upstream 61859 14891067 ~ 14895632 (+) True LOC120573965
XM_039824682.1 mRNA upstream 79929 14875731 ~ 14877562 (+) True amn
XM_039824684.1 mRNA downstream 20190 14981295 ~ 14984571 (+) False si:dkey-282h22.5
XM_039826234.1 mRNA downstream 31978 14993083 ~ 14998261 (+) False LOC120575438
XM_039826235.1 mRNA downstream 33547 14994652 ~ 14998261 (+) False LOC120575438
XM_039826233.1 mRNA downstream 34795 14995900 ~ 14998261 (+) True LOC120575438
XM_039825166.1 mRNA downstream 51688 15012793 ~ 15043696 (+) True aatka
TU209715 other upstream 1103205 13847139 ~ 13854286 (+) True G154743
TU209660 other upstream 1175806 13774701 ~ 13781685 (+) True LOC120573994
XR_005641808.1 other upstream 1181761 13769019 ~ 13775730 (+) False LOC120573994
TU210109 other downstream 20131 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 24595 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 30908 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 174686 15135791 ~ 15139706 (+) True G155088
TU210329 other downstream 549120 15510225 ~ 15512810 (+) True arl16

Expression Profile