RNA id: XM_039824998.1


Basic Information

Item Value
RNA id XM_039824998.1
length 5721
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120574578
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10034562 ~ 10049463 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGCTCTCGAAACGATCATCCGATTGAATGACGAGCGCGTCATGCTTGTCTTCCTCCTCTTATGTTCCGTGCGATCAGTGGCTCTGTGTTCCGCAATCCCCTGGGATACTGTATCAGCCTCGATGGCTCTGCTATCGGCGTTTAGCTCACACTGAATGGCTGCCTGGAGCAAGGGAAAACGGGAAGAGAGATCGCTGCGTCTCCTCCTTTAAACCAACGCTCTGCGTTAACTTCCCAACGAGGGGACCCTTTGGTGGTGTGCGTAGGCGCACCATGGCCCAGACCCTCCAGATGGCGATCCCAAACTTTGGCAACAATGTTTTAGAGTGTCTGAATGAGCAGCGGCTGCAGGGCCTCTACTGCGATGTCTCTGTGGTGGTCAAGGGCCATGCCTTCAAGGCCCATCGAGCTGTGCTGGCTGCTAGCAGTTCTTATTTCCGGGACCTTTTCAGCAGCAGCAATAGTGGAGGAGGTAGCAGCAATGAGACAAGCCCAAACATAGTGGAGCTCCCGTCGGCTGTGCAGCCCCAGAGCTTCCAGCAGATTTTGTCTTTCTGCTACACAGGCCGTCTCAGCATGACAGTGGGGGACCAGTTTCTCCTAATGTATACTGCAGGCTTCCTGCAGATCCAACAGATCATGGAAAAAGGCACTGAGTTCTTCCTAAAGGTCTCCTCCCCCAGCTGCGACTCCCAGGGCCTGCACGCTGAGGAGGCCCCACCTTCTGAGCCCCCACCTTCTGAGCCCCAGAGCCCTGTGACGCAGACCAGTAACAGTGCAGGCCGGCCTGCCTCTTGCTTGACGCCGCTCCCTCTGGTATCGCGAGTGAAGACAGAGCAGCCCGCTAGCCAGCCGGAAGCGGCCACCCCGTACTCAGTGGTCTGCACTCCTGTCGCCAAGCGGCTGTGGGAGGGTGGCAGCAGCCGAGATGGAGGCGGGGTAGGCTCAGGGGGAGGCGGTGGGGCCAGGAAGGCAGCCCGTTATTCCCAGGAGGCGGTGCGGGGCAGTGCCATTCAGAGCCCCGGAGCCCTCGGACTGGCCATGGGTATGGGTGCCAACGTAACCAGCCTGGCGGGCATGGTGGCCAGTGGCGGGCTTAGTGGCAGTGCCGGCACCAACGGGAGCTCTGCAGCAGGCCTCGGCATGTCGGAGGGCGCCAGCCCCGGCACCCTGAGCACCTACGCCAGTGACTCACCCATCAGCTACCatgatgatgaagaagaggaagaggggacAGATGAATGTGCTGAAGAGCAGTATCGGCAAATCTGCAACATGTATACCATGTACAGCATGCTCAACATGGGAGCAGCAGCTGGTGAACGTGTTGAGGCTCTACCagaccacacagagacacgggGTCGGATGCGAGGCAGAGACCTTACATGTCTCCCCGCAGAACTCATTGCTCAGATAGGCAACCGCTGTCATCCCAAACTGTACGAGGAAGGGGACCCTGCTGAGAAACTAGAGTTAGTCTCagGTACTTCTGTGTATATATCGCGAGCCCAGCTAATGAACTGTCATGTGAGCGCGGGGACCAGACACAAGGTGCTGCTTAGGAGGCTGCTGGCTGCCTTCTTTGACAGGAATACTCTGGCCAACAGTTGTGGAACAGGCATCCGCTCGTCCACCAACGACCCGAGCCGCAAGCCCCTGGACAACAGAGTTCTGCATGCGGTCAAATTTTATTGCCAGAACTTTGCCACTAGCTTCAAAGAGAGCGAGATGAATGCCATCGCAGCCGACATGTGCACCAACGCCCGACGTGTGGTCCGCAAGAGCTGGATCCCCAAGCTGAAGCTACTGATGGCCGAGAGCGACGCCTACACCGCTTACCTTCCCGACGGCGTCAAAATGGAAGACGACACCCTGGGGGCGGACCCAGCCTTCGACTCGGCCTCCGTGGAGGCCGCCGGCGGTGCCGGCATGGAGTCGGGGGGCTCTTCAGGTGAATCGCTACCAGGTGTGGGCGGGGACGGAGGACCGTTATTTTGAACATTGTGTGCGGGGAAAAAGTTGAAATTTGGTGACACACATGCAAGTATTCCCCAGTTCTGCTTGCCTCCTCACTCTTTGGCCAACGCTGATCTCTCACATCTGACTGTCTATACTACACTGCTAGGGTCAACAGTTGTTACCCTGATGTAACCAGGACATGAAAACTTAAATTTTTTGCTTTATGACTGTACAATGGAGTTAGTTGAGGaaagggagagagtgagagggttttctctctgcctcccctccccttgtcttttttttattttttattttattttttttttaggtgtgtAAGCGCATCCACTGTTGCATATTACATACATTCCCTGAAATGCAGGTGGTGGGGGGAGTTGCCAGTGCAGCTTGAGGAGGAAGGGATGGCTGGATAGACAGGCTAGGAGTAGAGGTGGCGAGTATATTGAATGTAAGCGTCAgtggcagttttctttatgcAACCCTAACACCTTGTATTCCAGCCTAGGAAAAAGGAACTAGATTTTAAAATAGATACAATAATAAACATTAACACTACCTTCCTACTTCCTCTCCTTTCATCTTCCACTCATCATCCTGCGAGTATTCTTCACCACATCACCTCTCGAGACCAGAGAATCTCACCTGAGTGTTTCACTGTGCAGTGTCTTATAGAAATGTAGCTcatctttctctgttttctaAATGTTTAGCATGTTTCTCTCGTCTACGAACTGAAAAAGTGATCCAGAGAGAAGGGGAAAGCTTTTTACTGAGATGATTGTAAAGAAAATTTAAAGGGCAACAGGTAATCAAAGATGGTCATATTTTTAGAAGACAAAACTATATTTATACAAGTGCCCATGCCTAGAACGGTGTGAGCAAAGAGAGTGAAAGGGGTTGTTTTAAAATCTCTAAGATCTTCGTGTTTTATTGAAAGAGGTCTTGTCAAATAAGGAAAAGTGctattttttgcatttaaacaaaaaaagacgTATAATAAAGCAGTATAATCATAAGTCCCatagtcatttatttttatctttatttgacAGTGCAGAGGGATGGAATGAGCAGTTGAACTGCTAAATTTGAAGCATTTCATCCTCAGcttggcttaaaataaataGAGAGACTGATTCAGCTGGCTTGACTGTTGTCTATGATAACCATTTCTTGTTAGGTTGTGAACCTGCAACGTTTGCATCCTTCGATAAAACATTTTGCCCACAACTTTGAAATTACCTGTAGAAATATAAAGGTTATTGATCTGACGGCTCAGCTAGTTTCTTATTTGTGCTGAAATTATTGACAAGAACAATAAACTGctgtcaaataataataattatggaATATTGGAACGTGCCTTTTTATTTGAAATCAATAAGCAGAAGCTTGGTGGGTACAGTGATATCACGAGGAGGCAATACTGCTTGAAAAGCAAATAGGCTTTATGGTACTATCCATGTGTGGGGAAACAGTTCTTTGGTAAAGAAGGAGAGCCtgtatttgtgtcttttttaagTATGTCGTTTATTCATGTATCTAATGCACCACCTCTTTAATAAGGAAATGCAAAATGGCTGACAGTTTTATTTTAGAGTTTAACATGATTTTTGTATCTTCCTTGAGAGTGGAGGTTTCTGCACCTTATTGAGAAAAACCAGAGGTTCATGCACCTTTTGAGAAATGTAGCAATTGAACCCTGTTAGGTTGaatctgtcttttctttctttatttttccccATGTCTGCATGTTTCTTGTTTTAGAAGTGGCACAAATTCCTACTGTAAATAATCAAGACGACTGTTGAGTTAAATCCCAAGTGTTCTTCCTTTTTGTTGCTGGATGCGTCTGATTATAAAATGTCAATAACTGACCTCTTTTCTACGTGAAAGTTTGTGTTTGCTAGAAGCTTTTTGAATGACCTGTAAGAGGTCCGCAGCACAGGGATTCATTGTTCCTGTTTCAGATGGATATAAGTGAAAATAGGGTGTGACGTAGGAATGTGTTCTCAACCTGAAATGCTCTCGCAGACGACCGATTGCTTTCTCCTTCTGGAGGGGGCTTTCTAAAgacgttgtatttttctgaaGACAGGTACAGGGTAAAAACCGGGAAGGAATCGGTGCTTCTTATTCAAGGCAGTTGAGTCAATCTTATTGAGAAAAAAACTAGAAACATGATAGATGAAGCTCAGCCTATTCTCACTATTGATGAAAGGATGAGTTTACTGAAATGTTTGACTGGATGATTTACGGACAGCAAAAGTGCAGTACCTTATAAGTATTCTGTAAAGGGTAATGACAACAATACCTCAGTAAGCTCTGCATTTGACTGTAGATGCCACATGATCACCCCTCCCCCACGAACGTACCTCTCCGGTATCTTTGAAGACTGCTGTGCTTCCTGTCCTTCATGCAGCTGGTGTCATGTTTCACTTCCACAAGATTATTCATGTGTTTCAGAGAAAGGCAAAGCAGTGGTTTTAGGTCGTTAACTCCGAATTATAataagtactttttttttttttctcagtggcTTTTAACTGTTAACTGTTAAAGTTTACAGTTGATCTCAAATTACATCTTAATGTTTTCcccaatgttttaaaaaaagaagtaattatCACACTACTTAAATTTGTATATTTAAGTTAACATAATGCCTGAAATAGTTTGCTGGGACATCAAATTATGTTATACAGAAAAACCTgtcatttcagattttttttatttttcaaaatatatCTACTATAATTCCAGATTCTTAGATAATTACTTTGCGTACAGAGTTAAAGGAGATACATGTTAATCACTAGGACCTCTGAATTTAATTGAGGGAGTTTTTGGGACATTCGGCCTTCTTAATATCTTCTTTAGCCTAATGGCTACTACATCTGTGGATGTCCCTGcgtaaagaaataaaaccagATATGACAATAGCCAATTACTGTTCAAATGTCTAAATTTAGTTTCCTAATAGATTGTGTCCTTCACAGAGGTAGAATTGTAGTGTAATCGGAGGGTAACTATGGTTTTGGTACTTATCAGGGTTTTTTACCTATAGTCATTGTTAAGTTCTCTGTCCAAAAAGTCCCTCGCTCACCAACTACTTGCACACCGCATTATCTGCAATAGGTGTGGGAGtgtatttgtttaacttttatgTGCATTTGAGAATAGAGAGATTCCATGCTTCTTATTTCAGTACGTTCTAAGCATATTGTAATTTCTGTACCTTTCAACGTGTTTACACTTCATAAAACATGTCGACCTACACACTTGAATGGATAAGGTTTTGCACGGCATGGGGATCCTTTTGTCACTAAACagtacatatataaatatgattATACACATGTAtagataaatactgtatattatatatagacgCACACATAGAGGTCAGATTGTTTGTTGTGCACTCGCAGCATGAGGTATATATTTACCCAGAAACGGCGCTTCTTCACAACCTGAGCAGTAATAGGTCTGCCCATGTCTTTGCCCCTGCTCCTTGCCCTCTGTAACCCTGTAGCGCCAGTGGACATTCTGTAAAGCTCATCCTATTTCTTTCTGTGTTCCAAGTGCCAATAACTTTGTGAAAGCCCTGTAACTGTGACCCAACATTATCAAAAGGTAATTGCACATTAAcaactgtaaaataaataaatacaaatcatagagaaaatgtcaaaatggATTAAATAATGAATATCTTAATAAAAGATTTGTAACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207800 lncRNA upstream 81207 9950608 ~ 9953355 (+) True LOC120574664
XR_005641879.1 lncRNA upstream 83690 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA upstream 83690 9948607 ~ 9950872 (+) False LOC120574664
TU207847 lncRNA upstream 99524 9921552 ~ 9935038 (+) True G153423
TU208163 lncRNA downstream 120479 10169942 ~ 10235939 (+) True G153640
TU208227 lncRNA downstream 349662 10399125 ~ 10399353 (+) True G153684
TU208283 lncRNA downstream 552954 10602417 ~ 10602964 (+) True G153740
TU208291 lncRNA downstream 560128 10609591 ~ 10638479 (+) True G153746
TU208356 lncRNA downstream 659905 10709368 ~ 10709629 (+) True G153799
XM_039824991.1 mRNA upstream 6837 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA upstream 6837 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA upstream 6837 9992789 ~ 10027725 (+) False LOC120574577
XM_039824995.1 mRNA upstream 6837 10011347 ~ 10027725 (+) False LOC120574577
XM_039824996.1 mRNA upstream 6837 10011796 ~ 10027725 (+) False LOC120574577
XM_039826307.1 mRNA downstream 5945 10055408 ~ 10056536 (+) True ier2a
XM_039825864.1 mRNA downstream 106977 10156440 ~ 10159160 (+) True alkbh7
XM_039825863.1 mRNA downstream 109978 10159441 ~ 10163606 (+) True LOC120575195
XM_039825744.1 mRNA downstream 133772 10183235 ~ 10191164 (+) True LOC120575114
XM_039823677.1 mRNA downstream 160427 10209890 ~ 10286541 (+) True LOC120573826
unassigned_transcript_846 other upstream 59989 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 95958 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_844 other upstream 98281 9935671 ~ 9936281 (+) True LOC120574414
unassigned_transcript_843 other upstream 100367 9931152 ~ 9934195 (+) True LOC120574413
unassigned_transcript_842 other upstream 113750 9920331 ~ 9920812 (+) True LOC120574623
TU207863 other downstream 15997 10065460 ~ 10066742 (+) True G153433
TU208172 other downstream 200914 10250377 ~ 10341623 (+) True G153646
TU208368 other downstream 702697 10752160 ~ 10752898 (+) True G153808
XR_005641865.1 other downstream 1014959 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 2036398 12085861 ~ 12115192 (+) True G154254

Expression Profile