RNA id: XM_039825070.1


Basic Information

Item Value
RNA id XM_039825070.1
length 4181
RNA type mRNA
GC content 0.51
exon number 4
gene id gprc5ba
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12938684 ~ 12952238 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caTGTGTGTGAGACCGCTGTGCGTCTAGAAAGGATGTATTAAGGTGGTCCCCCTGTCAGGCACCAATTCATTTATCGGAGAGTAAAACCAGTTAAAGGGAGGGAGGACAGAGAGCAGTCAGTGGCGGCTCTGAAGAGCTGTCACCTTCTCTGTTTGtataggctatagcctatgtgagcgtgtgtgcgtgtgcagagAGGGATTATCAGGCTACGCGCGTTATGCGGAGCGCAGTTTTGGTGATGCATTCAGTCGGGAGAAGTGCAGCGGGGAGCAGTGAGTGTCACCCCGGACATTCAGCGGCATATTCAGCGAACTAGCAGGAGAAGGGGATCCGGCAGGCTTTGGGGCACCGTGTCTGTGCATCACAGGATTTCGActtattgtgtgttttatttatttttgatgaaTGCTCGTTTCGTGGTGCAGTGAAAGTCAAAGATGAGCACCGCTGAACAAAGGATTTAAGGGGGAAACCATAAAAAATCTCTTCCACATTTGAATCCTGACACCCCCAGTGTGTTTCGTCCATGCCCATTCTGCCTCTGTGGACAACAGACACGGGCTGAATAATCGGGTGCCTCTGGTTTAAAAGCTGGAGCAGGAGGAATCATCTGGGCTGATCGCGTACGAGCCCAtgtggatggagagagaatacgcaaacacagagagcggagctcgttccgaaatgtgacatttttacTCCCCCAGTCTCGCATCAAACCTGAAACCGGTGCTTCTGCCTTCGTCCTCGATCGGATTTGTTTACATCAATTGAGGGATGGCGTTCCTCCCggtcctcctgctgctgctgactgtCGCTCATCGTGCCACCGGACTCTCTGAGGCCTCTGAGCCTCTCCCACGAGGCTGCGGCTGGGGCCTCGTCCGTCCCTACACCCTCCTCTGTGACCTGGACTCCATATGGGGTGTGGCTGTCGAGTCGGTGGCTGCCGGTGGGGTGCTGACTGCCATCTTGCTAGCCTTAGTCCTGCTGTGCCGCTTACACCACATCAGTGAAGCTGAGAAGCGCAGCGGCGTGGGACCcatcctcctgctgctcctcggCATCCTCGGCTTGTTCAGCCTGAGCTTTGCTTACCTGATCGAGCAGGATGAATCTTTATGTTTGCTCCGCAGGGCCCTGTGGGGTCTCCTGTTTGCCATCTGCTTCTCCTGTTTGCTAGTGCAGGGTGTGCGCCTGCGCAGGATTGGCCGTGAGCGCCGGAGCCCTGGTGGCTGTGCCCTTACAGGCCTCGCGCTGGGTTTGAGTGCCGTGCAGGGCATCATCGCCGCCGAGTGGCTACTTCTCACCGTGCTGAGGGAGGGACGTGCTGCCTGTCAGTACCTGCCACTGGACTTCTCACTAGCCTGCAGCTACGTGCTAGCCCTCCTACTAGCCGCGCTGACTGCCGCCTCTCTGGCCCTGTGCGGGAAGACACATCAGTGGCGCTGCAATGCCATCTGGCTGCTGGTGACCTGCCTGCTGTCGCTGCTGCTGTGGGTGGCCTGGGTGGGCTTCTATCTGTACGGCAACGCCTGGCTGGGGAGGTCCCCGGACTGGAATGACCCGGCACTGGCCATTGCTTTAGTGGCTCAGGGCTGGCTGCTACTGATCTTCCATGCCATTCCTGAATCCCACATCTGCCTGAGACCCCCTCCACAGCCCACTGCCCCAGATTACTTTGACACCTCCCAGAACTCGACACGGATGAGGGAGACCAGCTTCGACGAAGACATCCCTCTCTCACACAGGCAGTTTGTGGAGAACCAGGGCTACGGATACAACGATGAGAACACAGCAGGATTGAGGACCGGTGGTGGTGCTGGGCAACACAACACCAACACCGCCGCCAGACCCAGCGCTCCTTTCCGCAGCAACGTCTACCAACCCACCGAGATGACCATGATCCTGAACGGGGGAGCGGTGCCCTCTGCCCCTCCAACCTACACGGGGAGGCAGCTGTGGTGAGTGAGAGGATTGGAAAGAAGATGTGTGGTAGAAAATGAAGAAGAGGATGGAGAGGGTGAGGAGGGAGGGATCCGGGACGAGGGGCCTGCCTTGTTGAATTGGACTTAAAACATGGATGCCAACAGGGCCCTTCAACTCTGTGTACAGACTTAAATACTGACTGTGTGCCAATCAACTattgtatgagtgtgtgtgagactgagagagagagtaggGTGTGGAGGACAGAGCTAAAGCTCTTCTAGCTCACAAATCTCTATAGAAGGGTTCAAAAACTCAATATGTGACCAGCAAGTAGCAATACAAAACGCACGCTGACTCAGATCCGAAAATGTCAACATTCAGTATTATTTTCCCTTTGATTTGCTCCCCTGAGACTATACAGCACTGTTAGCATCCTTGAAAAACTGTGAAATCTATCGCCTTTTCCTGCTCTATCTCTCTTCCTGTCAGTCAGGATGTCTTTTCTGCTGCTCCTCACAATGCTGGCGCTCACGTGGGAACATTTGGCTCTgtcctccatccatccacagTGTAGGTGAAGACAGAGCACATGGGCAACTGTACAGCTCGAGCACCGCCCACTTAAAAAAATCCAGCctctgtgggtgtgtatgtagagtatatgagagaaaaaaaaaaaaaaaagtgtgtgtgtattccctACATCTCAACTTCACCGCTTCGATAAACCTCATCCCTCCAGACTGTTACCCCTCCATGAACGCTTCTTCCTCCCTGTCTATCTCGGTTTCCGGTATTACTGCACCGTCTGTGAATATAACACATAACTCTTCTCACCTTGCCTCATCCTCCCACCTGCATGGACACTTGTGTGAAACAAACTGTGAAGCCTGAACTGCGGTCGGTAAAGACGTTCCCAGTGACCACGAAACGCAGCAAAAGCAGCCTGGAGCACCTGGACAGAGGGATCACAAGCTGCTAATGACCTGCTGTTAGATACAATGGAGAAAAGTGGATTCTGATTGGACATGGAGGGCGTCAATCATTGGTGGGGCGGCACCGCTCCATGAATCTAGGTCAGACTGCTGTGTGCTGCTCTCACACATCTCCGGTGGCCACTGGCGTTTTAAACAAGCCAGGAGAAACTGTCACTTTATATCAGCAGGAAACGGAGCGAGGAAATGAAACGTTCTCCTTTACTCAGCTCCTCtatctgtgttcatgtgtgcgTACTTGTGATTTTATGAGTGTCTGAGGTTGACGGGGGATTCAAAAGTCAAGGTTGCTTTCTGGTGCTAAATATTCCTCCACACAACTTCCCAGTGCATCGCAGACCCACAGGAACAAACACGGATACAGATACAGTGGTCAAACCTGTGAGTGACAGGCTATAGATAGAGCTGTGGCTGGTGTGTGGAGATATCCTAGAGCCTTAGAAAGATCAGATTTACAGTGCAaggtagagagagggagatcaAATATAAGTGGAGGAATAAGGGGGATAGGAGCGAGCGAGGAGGAAGGAGATAGCGAGTGACGGTCCCGAGGTAAGTCTAATATGTTACAGTGCGCGATCTGTGTGAGAAAATGGCTCCCTGgtcagtctgtgtgtttgtgcgtgatGTGCAGGCGGCCATGCTGCTCTGTCTGCTGTCTTCTTTATCTGGTGAAgcgtctctccctcctcctcctcctgcctccCAGTGGTCGGCTATACCTCAAGTGTAGCCCTGTGCCAAGAAGGACTCTCGTTTCACTGGAGTCCCTGTTCCACGCCCTTTCCCTTCATCACAAcaccagctctctctcacttcaCCCGAGAAGCTGTGTACATAGTAGTGCTGTAAAGCTTTGCTTgcttgtttactttttttttttttttattaaactgtaGCCTAAGTTTAGAGATCATGTGTCATATGACCCACTGGAGAACTGACTACTGCAAACTGTTTTTATCtggggattttctttttttttttactggtttGCTTTGTTGTTCATATGTTTGCTTGTTGTTACATTATGCTTTTATTTCTCCCTTGCTGgtgtcttttattttcaaactagTATTTTGGAAATGATTTTGCCAAcgcttttatttttgtttgtttaattaatgTTCAAGTAAATGATATACATTGTCATTCAAAGGGATTTACGTCGATTGTACCTCCCACGCAGTATTTCTCAGTCAAGAAAGTGGTCCTCTCTTTGCTGTAAAAGTTACAGGGATACAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641886.1 lncRNA upstream 33867 12889419 ~ 12904818 (+) True LOC120574706
TU209272 lncRNA upstream 111108 12782774 ~ 12827577 (+) False G154447
TU209270 lncRNA upstream 130866 12782774 ~ 12807819 (+) True G154447
TU209223 lncRNA upstream 203773 12734683 ~ 12734912 (+) True G154410
TU209192 lncRNA upstream 369833 12566974 ~ 12568852 (+) True G154385
TU209328 lncRNA downstream 28015 12980253 ~ 12981635 (+) True G154494
XR_005641888.1 lncRNA downstream 39665 12991903 ~ 12995560 (+) True LOC120574709
TU209410 lncRNA downstream 75894 13028132 ~ 13034382 (+) True G154535
TU209430 lncRNA downstream 165156 13117394 ~ 13117721 (+) True G154555
TU209465 lncRNA downstream 281875 13234113 ~ 13234321 (+) True G154586
XM_039825068.1 mRNA upstream 7365 12923370 ~ 12931320 (+) True proza
XM_039825365.1 mRNA upstream 65770 12864935 ~ 12872915 (+) True LOC120574877
XM_039825987.1 mRNA upstream 79527 12854029 ~ 12859158 (+) True mfsd13al
XM_039824237.1 mRNA upstream 97340 12817115 ~ 12841345 (+) False sdr42e2
XM_039825501.1 mRNA downstream 64721 13016959 ~ 13026416 (+) True LOC120574968
XM_039825503.1 mRNA downstream 64721 13016959 ~ 13026416 (+) False LOC120574968
XM_039825502.1 mRNA downstream 64721 13016959 ~ 13026416 (+) False LOC120574968
XM_039825670.1 mRNA downstream 471307 13423545 ~ 13448411 (+) False LOC120575071
XM_039825669.1 mRNA downstream 471337 13423575 ~ 13448411 (+) True LOC120575071
TU209291 other upstream 92088 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 823493 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 1864859 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2185787 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 2597062 10250377 ~ 10341623 (+) True G153646
TU209346 other downstream 64748 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 816781 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 816781 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 816781 13769019 ~ 13775553 (+) False LOC120573994
unassigned_transcript_849 other downstream 817465 13769703 ~ 13769776 (+) True trnat-agu_6

Expression Profile